PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_093790_ncxm.t1
Common NameSOVF_093790
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 252aa    MW: 28319.6 Da    PI: 6.2478
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_093790_ncxm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.4e-20853147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+W++eEd+ll ++v+++G ++W+ I++ ++ gR++k+c++rw + 
  Sp_093790_ncxm.t1  8 KGPWSPEEDDLLTKLVQKHGARNWSVISKSIP-GRSGKSCRLRWCNQ 53
                       79******************************.***********985 PP
2Myb_DNA-binding57.92.4e-1862104347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++T+eEd+++v+a++++G++ W+tI+r ++ gRt++ +k++w++ 
  Sp_093790_ncxm.t1  62 PFTAEEDDIIVRAHHKFGNK-WATISRLLN-GRTDNAIKNHWNST 104
                        89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.602358IPR017930Myb domain
SuperFamilySSF466891.87E-325101IPR009057Homeodomain-like
SMARTSM007171.6E-17756IPR001005SANT/Myb domain
PfamPF002491.5E-19853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-26961IPR009057Homeodomain-like
CDDcd001675.00E-161052No hitNo description
SMARTSM007171.7E-1559107IPR001005SANT/Myb domain
PROSITE profilePS5129420.04660109IPR017930Myb domain
CDDcd001674.14E-1262105No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2362108IPR009057Homeodomain-like
PfamPF002491.6E-1562104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAAADRIKGP WSPEEDDLLT KLVQKHGARN WSVISKSIPG RSGKSCRLRW CNQLSPEVEH  60
RPFTAEEDDI IVRAHHKFGN KWATISRLLN GRTDNAIKNH WNSTLKRKFS AVGGVDEVYR  120
PEKRPEISHF SPPASPSESD VSDSGVAAGF RPAVVEEREN LEDDPLTALT LSLPGVEEQH  180
PSRIEPTQEE NRKGESVKET LSFGPELMTV MQEMIRKEVR SYMAEAEKSG VYFDGDSAQN  240
AVVERFCNGH FH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-4071093105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-4071093105C-Myb DNA-Binding Domain
1msf_C1e-4071093105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851071.10.0transcription factor MYB44-like
SwissprotO231605e-80MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0K9R8X80.0A0A0K9R8X8_SPIOL; Uncharacterized protein
STRINGXP_010691674.11e-147(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-82myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]