PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_093710_rjnc.t1
Common NameSOVF_093710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 312aa    MW: 35223.1 Da    PI: 7.2539
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_093710_rjnc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-092670345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        WT+eE +++ +a + + ++   +W ++a++++ g+t  +++  + 
  Sp_093710_rjnc.t1 26 TWTQEENKRFENALAVYDKDtpdRWQKVAAMLP-GKTVGDVIKQYK 70
                       7********************************.****99988775 PP
2Myb_DNA-binding46.39.5e-15135179347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Sp_093710_rjnc.t1 135 PWTEDEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-42271IPR009057Homeodomain-like
PROSITE profilePS512939.7052275IPR017884SANT domain
SMARTSM007174.9E-102375IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-122580IPR009057Homeodomain-like
CDDcd001678.74E-82672No hitNo description
PfamPF002491.6E-72670IPR001005SANT/Myb domain
PROSITE profilePS5129420.365128184IPR017930Myb domain
SuperFamilySSF466891.72E-16130183IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-18131183IPR006447Myb domain, plants
SMARTSM007171.1E-12132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-12132179IPR009057Homeodomain-like
CDDcd001679.76E-11135180No hitNo description
PfamPF002491.9E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKWEMEVLSS YLSSASWLID ESRSTTWTQE ENKRFENALA VYDKDTPDRW QKVAAMLPGK  60
TVGDVIKQYK ELEDDVSNIE AGLVPIPGYD TASAFTLEWV NNHGYDAYYN TYSPGGKRGP  120
PGVRGSDQER KKGVPWTEDE HKLFLMGLKK YGKGDWRNIS RNFVVTRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLENEALSP DNNSKRSNSP EQSTITVQTQ QQANSITMPK  240
THFQWDQSSN GTAIAFDSMQ GNLFMAPYGV GVGSYGFKVQ AQNLQRTDFV ENYVGPQTMG  300
FQIQPTQHYP HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1727911175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866028.10.0transcription factor DIVARICATA-like
RefseqXP_021866029.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-132DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9RAW40.0A0A0K9RAW4_SPIOL; Uncharacterized protein
STRINGXP_010685614.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-99Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]