PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_084710_zpfp.t1
Common NameSOVF_084710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 300aa    MW: 35920.4 Da    PI: 7.695
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_084710_zpfp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.62.3e-2552134186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+ qe+++ + +r+++++++ ++k++k lWe +s kmre+gf+rs++qCk+kw+nl +ryk ++++e +     ++++p++++++
  Sp_084710_zpfp.t1  52 QWSIQETKEFLIIRSDLDRNFMETKRNKLLWEVISTKMREKGFNRSAEQCKCKWKNLVTRYKGCETMEPEV---MRQQFPFYNEMQ 134
                        7********************************************************************96...45679******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819954.71E-6737No hitNo description
CDDcd122031.83E-2351116No hitNo description
PfamPF138371.6E-2052136No hitNo description
PROSITE profilePS500907.02753109IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEGHMHHQQQ HQYHHQQQQQ QQQQQQHQAP PQQHQMSGGA TVGVDTGDRF PQWSIQETKE  60
FLIIRSDLDR NFMETKRNKL LWEVISTKMR EKGFNRSAEQ CKCKWKNLVT RYKGCETMEP  120
EVMRQQFPFY NEMQAIFSAR MQRMMWAEEE SGPGTSSKKN KQGLTSDEEE DEDTDGEKVG  180
HVKKKAKKAK TTTTTSVANV GTITNSNNSI NAMKEMLEDF MKQQLQMEVQ WREAYEAREE  240
ERMRAEMEWR QRMEALENER VLMERRWRER EEQRKMREEA RAEKRDALIT TLLNKLRRED
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855556.11e-148trihelix transcription factor GT-3b-like
SwissprotQ9SDW06e-74TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A0K9RBN40.0A0A0K9RBN4_SPIOL; Uncharacterized protein
STRINGXP_010676752.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.14e-59Trihelix family protein