PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_083250_khdt.t1
Common NameSOVF_083250
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 325aa    MW: 36184.1 Da    PI: 4.7117
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_083250_khdt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.83.2e-37291212103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y+++ed+++++++sw+++g+sfvv++++ fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++g+k+l
  Sp_083250_khdt.t1  29 FLTKTYQLVEDPSIDDVVSWNDDGSSFVVWNPTVFARDLLPRYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFTNESFRRGEKQL 111
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i+r+k++
  Sp_083250_khdt.t1 112 LCEIQRRKTT 121
                        *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3626118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.8E-3926118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3329118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAGDEHAAEN GGGGGGSGGD CQRSIPTPFL TKTYQLVEDP SIDDVVSWND DGSSFVVWNP  60
TVFARDLLPR YFKHNNFSSF VRQLNTYGFR KVVPDRWEFT NESFRRGEKQ LLCEIQRRKT  120
TTTAVTPAAQ PQVSPGDSGE EQVISNSPPL GIPTSVYCNI NNNNSSSSSN NRVELIDENE  180
RLRRENMELN KELTNMKTLC NNIFSLMTNF ATSQGNTTAT SSSTNCMRQA LDLLPRKELE  240
VVVDVERPKS PKIFGVAIGM KKRGRGEGEG DGEGFGVTRV QGDMMETDVE IKCEPLDGNG  300
EIDDDENQET PWLKQCHRQN QRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-251612017131Heat shock factor protein 1
5d5v_B2e-251612017131Heat shock factor protein 1
5d5v_D2e-251612017131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842349.10.0heat stress transcription factor B-2a
SwissprotQ9SCW43e-94HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0K9RC680.0A0A0K9RC68_SPIOL; Uncharacterized protein
STRINGXP_010693477.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-80heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]