PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_080560_hncm.t2
Common NameSOVF_080560
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GATA
Protein Properties Length: 358aa    MW: 39399.2 Da    PI: 6.3258
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_080560_hncm.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.91e-16197233135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg+++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  Sp_080560_hncm.t2 197 CQHCGVSEndTPAMRRGPSGPRTLCNACGLMWANKGT 233
                        **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-65792IPR010399Tify domain
PROSITE profilePS5132011.8235792IPR010399Tify domain
PfamPF062006.8E-96191IPR010399Tify domain
PROSITE profilePS5101712.372125167IPR010402CCT domain
PfamPF062037.5E-15125166IPR010402CCT domain
SMARTSM004012.8E-10191245IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-11196242No hitNo description
PROSITE profilePS501148.761196256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-14196238IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.34E-16196245No hitNo description
PROSITE patternPS003440197224IPR000679Zinc finger, GATA-type
PfamPF003201.9E-14197233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAANPKPLQS RPYEGEEVPI PVDGEDSGES DGDDSMDDDG VDEDQTRIES GGVGPSSSRR  60
TNELTLSFEG EVFVFPAITP EKVQAVLLLL GERDFHAGVP TAEVSCGQDN RVTGSPARKS  120
IISHRVASLV RFREKRKERC FDNKIRYTIR KEVAERMHRK NGQFASLRED SASSNLEAKK  180
NLLVGAALGP ETVLHKCQHC GVSENDTPAM RRGPSGPRTL CNACGLMWAN KGTLRNLSKG  240
RRNFILDQAE PVKRTRSKCL ISFTFNCREP RLIVNLPLLK KIHLPTRRTP KGDSGAVTIA  300
YINSLVKPHK ENSHGIEDDT SMLTEIAVDS SGNFDKDDTL AELDNSSETD VDIPTNSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854329.10.0GATA transcription factor 19-like isoform X1
RefseqXP_021854382.10.0GATA transcription factor 19-like isoform X1
SwissprotQ8GXL71e-60GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0K9RCX30.0A0A0K9RCX3_SPIOL; Uncharacterized protein
STRINGXP_010671467.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.13e-62ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]