PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_076930_okju.t2
Common NameSOVF_076930
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 293aa    MW: 32111.3 Da    PI: 9.0118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_076930_okju.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-1268112147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Sp_076930_okju.t2  68 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 112
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-1662118IPR009057Homeodomain-like
PROSITE profilePS5129413.75863117IPR017930Myb domain
TIGRFAMsTIGR015572.0E-1866115IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.8E-666118IPR009057Homeodomain-like
SMARTSM007179.6E-1067115IPR001005SANT/Myb domain
PfamPF002495.4E-1068112IPR001005SANT/Myb domain
CDDcd001671.10E-770113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVSMNPGSPE GFYLDAKGIA LPGMNPFSAP PPEESPATTA ATATVSSPTD DSSCSKKIRK  60
PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQIRSHAQ KYFLKVQKSG  120
SNEHLPPPRP KRKAAHPYPQ KASKLGPSVS QPTGSLQASS HLAEPGLQRP DTSIIPRYPN  180
NTTVASSWAN SIQPNVAKGT PIANNCSSSN ESTSMARTAG EMNEAVKHAP PLRVLPDFSQ  240
VYGFIGSVFD PESSGHLQRL KKMDPIDVET VLLLMRNLSI NLRSPDFEDH EIH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844202.10.0protein REVEILLE 6-like isoform X2
SwissprotQ8H0W31e-104RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0K9RG340.0A0A0K9RG34_SPIOL; Uncharacterized protein
STRINGXP_010671614.11e-162(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-88MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]