PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_075750_ykge.t1

Common Name

SOVF_075750

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HD-ZIP

Protein Properties

Length: 881aa MW: 96800.1 Da PI: 6.505

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_075750_ykge.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.5e-20	142	197	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k Sp_075750_ykge.t1 142 KKRYHRHTARQIQEMEALFRECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMK 197 688899***********************************************998 PP
2	START	140.2	2.1e-44	359	592	3	206
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.................dsgealrasgvvdmvlallveellddkeqWdetla 77 a + ++el+k+ ++ep+W + s n+++vl +e s+ ++ea r++++v+m++ +lv ++ld + +W e ++ Sp_075750_ykge.t1 359 AMSSMDELLKMCHVNEPLWGRNS--TNSMDVLNMEEYSRMfpwphhhvdplkphyneLRTEATRDKALVIMNSINLVDSFLDAN-KWVELFP 447 66789****************..66666666666666666777799********************************.*** PP ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEE CS START 78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe...sssvvRaellpSgili 154 +a+tl+ i sg g l+l++ae q+lsplvp R+ f+Ry+ ++g w+ivd vd q + + + R +++pSg++i Sp_075750_ykge.t1 448 sivsRAKTLQIIASGvsghasGSLHLIYAEVQVLSPLVPtRETHFLRYCHHnAEEGMWAIVDYPVDGFQGSIQlsgNGIIPRYRRRPSGCII 539 ***********************************************99*********999988775333345******* PP EEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++++ng+skvtwveh++ + p h+ + + v+s +a+gak+w+a lqrqce+ Sp_075750_ykge.t1 540 QDMPNGYSKVTWVEHAEILEEKPiHQTFDQYVHSAMAFGAKRWLAILQRQCER 592 *************9988888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.41E-19	128	200	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.763	139	199	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-22	140	205	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-18	140	203	IPR001356	Homeobox domain
Pfam	PF00046	8.1E-18	142	197	IPR001356	Homeobox domain
CDD	cd00086	1.28E-16	144	200	No hit	No description
PROSITE pattern	PS00027	0	174	197	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.854	348	595	IPR002913	START domain
SuperFamily	SSF55961	7.55E-26	349	594	No hit	No description
CDD	cd08875	3.29E-107	352	591	No hit	No description
SMART	SM00234	3.8E-26	357	592	IPR002913	START domain
Pfam	PF01852	2.3E-37	359	592	IPR002913	START domain
SuperFamily	SSF55961	3.66E-15	610	841	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MYGDCQVALP STMGGGGENG ISSTVADCSS LFTSPIRNPN HHNLHNQHHH QHHNDHHQHH 60 HNVNAFTFMA SLPPAFQTFS PIIPVKEERG KEELMESMSG SELNMEGQGG LSGNELDSLS 120 GGGGGDPLQP QTSQGGGVGG KKKRYHRHTA RQIQEMEALF RECPHPDDKQ RMKLSHDLGL 180 KPRQVKFWFQ NRRTQMKAQQ DRSDNMILRS ENDNLKNENY RLQAVLRSLV CPGCGGGSIL 240 GEVEYDEQQL RLENARLKEE LDRVCSVASR YTGRSLQTLG PSPPPLALLP PPPSLDLDMG 300 MYSRHFQDSM PPNCTQMLPM PLLPGPTDFP GGDGSGSGGG GGGGGLILDE ERSLAMDLAM 360 SSMDELLKMC HVNEPLWGRN STNSMDVLNM EEYSRMFPWP HHHVDPLKPH YNELRTEATR 420 DKALVIMNSI NLVDSFLDAN KWVELFPSIV SRAKTLQIIA SGVSGHASGS LHLIYAEVQV 480 LSPLVPTRET HFLRYCHHNA EEGMWAIVDY PVDGFQGSIQ LSGNGIIPRY RRRPSGCIIQ 540 DMPNGYSKVT WVEHAEILEE KPIHQTFDQY VHSAMAFGAK RWLAILQRQC ERVASLMARN 600 LSDLGVIQSP EARKNFMKLS QRMIRTFSVN ISTSGGQSWT ALSESADDTV RITTRKIMEP 660 GQPNGLILCA VTTTWLPYSH DQVFELLKNE YRRSQLEALS NGSSLHEVAH IANGSHPGNS 720 ISLFRINVAS NSSQNVELML QESCTDPSGS LVVYATMEVD YIQLVMSGED PSCIPLLPTG 780 FSIIPLGRNN ITPDATNTAE GGGGCLLTVG IQVHASAIPN AKLNLSSVNA INNHICSVVH 840 QINLSLSNPN PNNVTNEQSN VNVSNVNACV ASTSNNNVVG S

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MYGDCQVALP STMGGGGENG ISSTVADCSS LFTSPIRNPN HHNLHNQHHH QHHNDHHQHH  60
HNVNAFTFMA SLPPAFQTFS PIIPVKEERG KEELMESMSG SELNMEGQGG LSGNELDSLS  120
GGGGGDPLQP QTSQGGGVGG KKKRYHRHTA RQIQEMEALF RECPHPDDKQ RMKLSHDLGL  180
KPRQVKFWFQ NRRTQMKAQQ DRSDNMILRS ENDNLKNENY RLQAVLRSLV CPGCGGGSIL  240
GEVEYDEQQL RLENARLKEE LDRVCSVASR YTGRSLQTLG PSPPPLALLP PPPSLDLDMG  300
MYSRHFQDSM PPNCTQMLPM PLLPGPTDFP GGDGSGSGGG GGGGGLILDE ERSLAMDLAM  360
SSMDELLKMC HVNEPLWGRN STNSMDVLNM EEYSRMFPWP HHHVDPLKPH YNELRTEATR  420
DKALVIMNSI NLVDSFLDAN KWVELFPSIV SRAKTLQIIA SGVSGHASGS LHLIYAEVQV  480
LSPLVPTRET HFLRYCHHNA EEGMWAIVDY PVDGFQGSIQ LSGNGIIPRY RRRPSGCIIQ  540
DMPNGYSKVT WVEHAEILEE KPIHQTFDQY VHSAMAFGAK RWLAILQRQC ERVASLMARN  600
LSDLGVIQSP EARKNFMKLS QRMIRTFSVN ISTSGGQSWT ALSESADDTV RITTRKIMEP  660
GQPNGLILCA VTTTWLPYSH DQVFELLKNE YRRSQLEALS NGSSLHEVAH IANGSHPGNS  720
ISLFRINVAS NSSQNVELML QESCTDPSGS LVVYATMEVD YIQLVMSGED PSCIPLLPTG  780
FSIIPLGRNN ITPDATNTAE GGGGCLLTVG IQVHASAIPN AKLNLSSVNA INNHICSVVH  840
QINLSLSNPN PNNVTNEQSN VNVSNVNACV ASTSNNNVVG S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021852076.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q336P2	0.0	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A0K9RGC1	0.0	A0A0K9RGC1_SPIOL; Uncharacterized protein
STRING	XP_010677364.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]