PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_070900_dkyu.t1
Common NameSOVF_070900
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 549aa    MW: 60675.1 Da    PI: 8.2542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_070900_dkyu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-1563109148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT +Ede l +av  + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Sp_070900_dkyu.t1  63 KGGWTLDEDETLRNAVSTFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 109
                        688*****************************.************986 PP
2Myb_DNA-binding63.25.1e-20115161148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEde++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Sp_070900_dkyu.t1 115 KGPWTQEEDEKIVELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 161
                        79******************************.*************97 PP
3Myb_DNA-binding52.98.7e-17167210146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +++WT +E++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++
  Sp_070900_dkyu.t1 167 KDAWTLDEELALMNAHRMYGNK-WAEIAKFLP-GRTDNAIKNHWNS 210
                        679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.95858109IPR017930Myb domain
SMARTSM007173.3E-1362111IPR001005SANT/Myb domain
PfamPF002494.2E-1463109IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-1464119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-1865115IPR009057Homeodomain-like
CDDcd001676.70E-1266109No hitNo description
PROSITE profilePS5129432.167110165IPR017930Myb domain
SuperFamilySSF466896.97E-32112208IPR009057Homeodomain-like
SMARTSM007172.9E-18114163IPR001005SANT/Myb domain
PfamPF002496.7E-19115161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-28116164IPR009057Homeodomain-like
CDDcd001672.17E-16117161No hitNo description
Gene3DG3DSA:1.10.10.603.3E-23165216IPR009057Homeodomain-like
SMARTSM007178.5E-16166214IPR001005SANT/Myb domain
PROSITE profilePS5129422.305166216IPR017930Myb domain
PfamPF002493.1E-15167210IPR001005SANT/Myb domain
CDDcd001673.82E-12169212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MAEGDLKAEE CCLENKQSAA ASSSSVSEEE GSASVSLKSS GVSSPVATSP SHRRTTGPIR  60
RAKGGWTLDE DETLRNAVST FKGKSWKKIA EFFPDRSEVQ CLHRWQKVLN PELVKGPWTQ  120
EEDEKIVELV ARYGPTKWSV IAKSLPGRIG KQCRERWHNH LNPDIKKDAW TLDEELALMN  180
AHRMYGNKWA EIAKFLPGRT DNAIKNHWNS SLKKKLDFYL ATGKLPPVAK NNLQNNVRDT  240
ERPTCSEKLM VGSNKESDSS AQTSSGGTDF HVPGGTNTKL GLSSELQETG PASCHVDECA  300
DSDVVEQSSH LEHSYRNSNS LPLSLPLFDR CRNADRVVQN EDAVTPVQPV YGSLYYKPPQ  360
YETCSPSESN LTNSCTQPDC SPALLTSRIG FFTPPSVKSN GASVQSPESI LKVAAMTFPN  420
TPSIMRKRRV QFHTPQTQKN GKFDEKGGCS SSIDQLSAIH QSRHQDEGLV PTPPSHPSVV  480
TAFCNGMSFN ASPPYRLRTK RMAILKSVEK QLEFTLDKEK EGDTKSLELP FRGNTPLREG  540
ISHTKMGVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-69622165159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-69622165159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021867429.10.0transcription factor MYB3R-3
RefseqXP_021867430.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-153MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A0K9RHV40.0A0A0K9RHV4_SPIOL; Uncharacterized protein
STRINGXP_010678081.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-143myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]