PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_062940_xzqd.t1
Common NameSOVF_062940
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 597aa    MW: 68733.5 Da    PI: 4.9482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_062940_xzqd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05569588221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C++Cg+ F ++s L++H++
  Sp_062940_xzqd.t1 569 VCEKCGEEFESRSKLHKHLS 588
                        6*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1108.9E-22476IPR001623DnaJ domain
SuperFamilySSF465656.28E-21578IPR001623DnaJ domain
SMARTSM002711.6E-18769IPR001623DnaJ domain
PROSITE profilePS5007618.471877IPR001623DnaJ domain
CDDcd062571.10E-14866IPR001623DnaJ domain
PfamPF002261.3E-18974IPR001623DnaJ domain
PRINTSPR006252.6E-121028IPR001623DnaJ domain
PRINTSPR006252.6E-122843IPR001623DnaJ domain
PRINTSPR006252.6E-124969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576679.64E-14285337No hitNo description
SMARTSM003555.4295319IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6295324IPR007087Zinc finger, C2H2
PfamPF121715.0E-9295320IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280297319IPR007087Zinc finger, C2H2
SMARTSM003554.1568592IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827568597IPR007087Zinc finger, C2H2
PROSITE patternPS000280570592IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MAATEKRCYY EVINLPQNCT PDEIRSAYKK LALQRHPDKL IQSGVAVEDA TASFQELVRA  60
YEILSDPKER SWYDSHRSQI LFSSSSTSGN DSDSPLPDLF SYFSPSCYSD YTNPKTGFYK  120
VYGDVFDKIF AHEIKYCRLM GLNLGLVKEA PLFGDLKCDY NQVNAFYGYW LSFSSVMDFG  180
WVNKYDAAAG ENRKSRRVME EENKKVRKKA KREFNETVRG LAEFVKKRDK RVIEMMVKKE  240
KEREKKQAEE MARKKERERE KLERARLYQE PDWAKVEEVE VFEEEEEGEE ERKELYCAAC  300
GKKFKSDKQW KNHEQSKKHK EKVAQLRKSF IEEDDFEDVE EVDVVDGEFQ HEDEAVENVE  360
DKNDVAHDGF VSAEDDVDDL EEKFKESVGF EEVRSRYELP SDNEVGIGND EEVAQPAGGS  420
DDESIVDLEA MISSRRNKKN VTFSTSKNEH FEYDNPQSED GGNPQSEGED DDEPMENNKT  480
KGKKKSRRAK KDKGKVESSS NGDNNESAEE NDGMNASDTA NNGDDDQDSK TSTKRRKDKG  540
TSKRDTETKQ KSSSRGKKQK EKSKNHDPVC EKCGEEFESR SKLHKHLSDT GHASLKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211KKVRKKAKR
2534559RRKDKGTSKRDTETKQKSSSRGKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856364.10.0DNAJ protein JJJ1 homolog
TrEMBLA0A0K9RKE20.0A0A0K9RKE2_SPIOL; Uncharacterized protein
STRINGXP_010695209.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-128DNAJ heat shock N-terminal domain-containing protein