PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_062350_wftn.t1
Common NameSOVF_062350
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 326aa    MW: 37118.3 Da    PI: 8.0631
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_062350_wftn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12189214126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd+CkF+H+
  Sp_062350_wftn.t1 189 YQPDICKDYKETGYCGYGDSCKFMHD 214
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9187219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878188216IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7188215IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10189214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12189219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.1E-13251307IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.71E-13265309No hitNo description
PfamPF139207.3E-9265308No hitNo description
PROSITE profilePS5008910.689266304IPR001841Zinc finger, RING-type
SMARTSM001841.6E-4266303IPR001841Zinc finger, RING-type
CDDcd001621.46E-8266307No hitNo description
PROSITE patternPS005180281290IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSESNEQEKK VDKVCSFVKK PLRNKVIRKR PVDAVSDGDE DNKGESSVVQ RAKRPTMADN  60
GLHFSTGTSK RSVSEESTKD SKNVLFQYES SKEIQVQNDS KATATLETET DFSRDSRAIR  120
ERALKKAEEA LKGMNKKSGD DKLYKGMNSY TDHRAGFRRE QTLAAEKAGG SHGPLRASAH  180
IRVSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQMEKEWDE TEKARKRNLA  240
LGGHDSDEED VEHDDENDDD ALPFACFICR EPFVDPVMTK CKHYFCEHCA LKHHSKNKKC  300
FVCNKPTQGI FNTAHEIRKR TAADKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-6913171313RING finger protein 113A
5z58_M8e-6913171313RING finger protein 113A
6ff4_t8e-6913171313RING finger protein 113A
6ff7_t8e-6913171313RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855427.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_021855428.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-159C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0K9RKI30.0A0A0K9RKI3_SPIOL; Uncharacterized protein
STRINGXP_010667731.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-161C3H family protein