PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_060870_ayep.t1
Common NameSOVF_060870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 425aa    MW: 48322.1 Da    PI: 6.6421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_060870_ayep.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13208259155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Sp_060870_ayep.t1 208 QRMTHIAVERNRRRQMNQHLNALRSLMPPS---YVQRGDQASIIGGAIDFVKELE 259
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.64E-12206263No hitNo description
PROSITE profilePS5088815.453207258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17207275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11208259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-14208271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-11213264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEKLQGPINP CQQLITEDFE VGNWLEEFIS STTTGSLKFE DPYNYYSEET STYNGGECNL  60
PSLEDKMPFL QMLQTVEQHH QHQQQQQQQQ HQHSVIMQQF EPANFQFLLR LQHQLVVESC  120
VTTNQDINVG NNNHNDGVIT DLLHSPGVKS ETTEVHPNER VKEEDEKCDI GRSNKRTHVL  180
KTTGVTKEKR KRKRSTRPAK NKEEVETQRM THIAVERNRR RQMNQHLNAL RSLMPPSYVQ  240
RGDQASIIGG AIDFVKELEQ MLQSLQAQKR MKQIEENGDV SISSTTSTSS SSNVNLSNIF  300
MASSSSSSFH QLRSPLHSQE EGKGNGKGNE EYSAEKKSAL ADIEVVVIQN HVNLKIQCQR  360
KPGQLIQAIV AFEELRLTVL HLNITSLHSL VHYSFNLKIE EDCKLGSADE VARAVHQIFS  420
LINLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208219RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845908.10.0transcription factor bHLH57-like isoform X1
TrEMBLA0A0K9RKS40.0A0A0K9RKS4_SPIOL; Uncharacterized protein
STRINGXP_010688515.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-63bHLH family protein