PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_057020_iign.t1
Common NameSOVF_057020
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 1403aa    MW: 153635 Da    PI: 6.1205
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_057020_iign.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.41.1e-1910771174185
           trihelix    1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77  
                         +Wt++ +++Li+++ +++++   ++            +kk++W+ vs+ m ++g+ +sp+qC++k+++lnkrykk++++ +++ ++++++
  Sp_057020_iign.t1 1077 KWTDNIIRLLIAVVASVGDEGMFEAkdglkrksgmllQKKGKWKMVSNIMISKGCCVSPQQCEDKFNDLNKRYKKLNDILGRGtSCQVVE 1166
                         7**************9999888654467778889999*********************************************95588887 PP

           trihelix   78 tcpyfdql 85  
                         +  + d +
  Sp_057020_iign.t1 1167 KPCLMDAM 1174
                         77666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF550087.07E-1633106IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1007.7E-1736106No hitNo description
PROSITE profilePS5084618.28837103IPR006121Heavy metal-associated domain, HMA
TIGRFAMsTIGR000031.7E-939102IPR006122Heavy metal-associated domain, copper ion-binding
CDDcd003713.96E-1039102No hitNo description
PfamPF004031.5E-114099IPR006121Heavy metal-associated domain, HMA
PROSITE patternPS0104704270IPR017969Heavy-metal-associated, conserved site
SuperFamilySSF550085.63E-17107181IPR006121Heavy metal-associated domain, HMA
PROSITE profilePS5084621.12111177IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1006.7E-20112180No hitNo description
TIGRFAMsTIGR000034.4E-9114175IPR006122Heavy metal-associated domain, copper ion-binding
PfamPF004031.1E-9114174IPR006121Heavy metal-associated domain, HMA
CDDcd003713.60E-14114175No hitNo description
PROSITE patternPS010470116145IPR017969Heavy-metal-associated, conserved site
SuperFamilySSF550081.83E-7180254IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1004.3E-7185265No hitNo description
PROSITE profilePS5084610.124186252IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:2.70.150.102.1E-29350525IPR008250P-type ATPase, A domain
TIGRFAMsTIGR015259.1E-185351948IPR027256P-type ATPase, subfamily IB
SuperFamilySSF816654.45E-11376422No hitNo description
PfamPF001228.1E-60389629IPR008250P-type ATPase, A domain
TIGRFAMsTIGR014944.5E-74391923IPR001757P-type ATPase
SuperFamilySSF816532.75E-22438524No hitNo description
PRINTSPR001199.5E-27474488No hitNo description
SuperFamilySSF816654.45E-11525629No hitNo description
Gene3DG3DSA:3.40.50.10005.2E-53609652IPR023214HAD-like domain
PfamPF007024.0E-42634859No hitNo description
SuperFamilySSF567841.19E-51637656IPR023214HAD-like domain
PRINTSPR001199.5E-27638652No hitNo description
PROSITE patternPS001540640646IPR018303P-type ATPase, phosphorylation site
Gene3DG3DSA:3.40.1110.106.5E-16653772IPR023299P-type ATPase, cytoplasmic domain N
SuperFamilySSF567841.19E-51702947IPR023214HAD-like domain
PRINTSPR001199.5E-27770781No hitNo description
Gene3DG3DSA:3.40.50.10005.2E-53773914IPR023214HAD-like domain
PRINTSPR001199.5E-27792802No hitNo description
PRINTSPR001199.5E-27845864No hitNo description
PRINTSPR001199.5E-27868880No hitNo description
PfamPF138373.5E-1710751200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030001Biological Processmetal ion transport
GO:0098655Biological Processcation transmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0000166Molecular Functionnucleotide binding
GO:0005507Molecular Functioncopper ion binding
GO:0019829Molecular Functioncation-transporting ATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1403 aa     Download sequence    Send to blast
MEVNGKSDLN VPLLEAQDSV TVNISPPTPY DDKKIKTAKF KIKGIECGSC TTSVESVVGK  60
LNGVVTVVVS PMDGQTVVKY MPEMVDPKRI RETVENAGFQ VEGYPEQEIE VCRLKIKGMA  120
CTSCSESVER ALLVADGVKK AVVGLSLEEA KVHFDPNVTN PSKIIEAVED SGFEADLINP  180
GNDVNKVHLK LDGVHSLEDV STIRIALELA VGVNHVDIDM EGKKTTVSYD PDVTGPRSLI  240
KCIREASVGV TCYDASLYVP PRQRDLDHWN EIQMYRNQFL WSCLFSAPVF VFSMVLPMLP  300
PYGDWLDYRI HNMLTIGMLL RCILCAPVQF VIGRRFYIGA YHALRRKSAN MDVLVAVGTN  360
AAYLYSLYIL FKALTSNDFE GQDFFETSAM LISFILLGKY LEIVAKGKTS DALAKLSELA  420
PDTACLVTID GNGNVTSETE ISTQLIQRND LFKIVPGEKV PVDGIVIDGQ SYVNESMITG  480
EAVPVAKRPS DKVIGGTVNE NGCIIVKATH VGSETALSQI VQLVEAAQLA RAPVQKLADQ  540
ISRFFVPTVV AAAFITWLAW FVTGVAGVYP KHWIPKAMDK FELALQFGIS VVVVACPCAL  600
GLATPTAVMV ATGKGASLGV LIKGGSALQK AHKVKAVVFD KTGTLTVGKP VVVNAVLFSG  660
VTLEELCNMT IAIEANSEHP LAKAVGAHAK TLRKKHQSLA DHVEDAKDFE VHPGAGVGGK  720
VGDKIVLVGN KRLLQVYNVP INDEIKEYIS KTENLARTCV LVAIDGKVGG AFSVTDPVKP  780
EAARVVRFLQ SMGISSIMVT GDNWGTATAI AREVGINQVF AETDPIGKAE KIKEIQMKGV  840
TVAMVGDGIN DSPALVAADV GMAIGAGTNV AIEAADIVLI KSNLEDVVTA IDLSRKTMSK  900
IRLNYVWALG YNVLAMPIAA GILFPFTGIR LPPWVAGACM AASSVSVGYV HIEMDRSGLG  960
GGFLSGSNVR LLDMEMPVDK LQQTQMGHQL MTHQSLELHP LNMMSSIENE HPLGFIEAKG  1020
LSLKGMSMDF GKGKGISLNN NTSSEDDEPS YYTGDDVNGE NCCLVKDTKE SPWQRMKWTD  1080
NIIRLLIAVV ASVGDEGMFE AKDGLKRKSG MLLQKKGKWK MVSNIMISKG CCVSPQQCED  1140
KFNDLNKRYK KLNDILGRGT SCQVVEKPCL MDAMPHLTEK AKDEVKKILS SKHLFYREMC  1200
AFHNGQRIPG CHDIDLQAHL LPQPNENNNA SEIHEADENY ESESDDDSYE DDDEKNFDTK  1260
SVRIEGCFAK SSMNGGSNTN FPLMETMFQD VAKSPLEQRS LIQQQMWQLE VQKVKLQGEA  1320
LELEKQRLKW LRFRSKKDRE IERLRLENER GKLENDRMVL LLKQKEMMLG MPKSDTLLEP  1380
ISLSIDRLQG RDGNHGIKAD RHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3j09_A1e-15020094717704copper-exporting P-type ATPase A
3j09_B1e-15020094717704copper-exporting P-type ATPase A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCopper (Cu) transporter that mediates Cu transport in root vacuoles. Involved in Cu detoxification by sequestrating Cu into root vacuoles and limiting translocation of Cu from the roots to the shoots, and accumulation in grains. {ECO:0000269|PubMed:27387148}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by copper in roots, but not in shoots. {ECO:0000269|PubMed:27387148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862889.10.0copper-transporting ATPase HMA4-like isoform X1
SwissprotQ6H7M30.0HMA4_ORYSJ; Copper-transporting ATPase HMA4
TrEMBLA0A0K9RLX40.0A0A0K9RLX4_SPIOL; Uncharacterized protein
STRINGXP_010673611.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-73sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Huang XY, et al.
    A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.
    Nat Commun, 2016. 7: p. 12138
    [PMID:27387148]