PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_055790_wyuw.t1
Common NameSOVF_055790
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GATA
Protein Properties Length: 343aa    MW: 37725.9 Da    PI: 4.724
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_055790_wyuw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.18e-16190226135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  Sp_055790_wyuw.t1 190 CQHCGISEksTPAMRRGPSGPRTLCNACGLMWANKGT 226
                        *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.995388IPR010399Tify domain
SMARTSM009798.4E-65388IPR010399Tify domain
PfamPF062008.7E-105787IPR010399Tify domain
PfamPF062031.3E-15121162IPR010402CCT domain
PROSITE profilePS5101712.789121163IPR010402CCT domain
PROSITE profilePS501148.959184240IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-13184237IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13187239No hitNo description
Gene3DG3DSA:3.30.50.106.5E-15188231IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.17E-16189232No hitNo description
PfamPF003201.6E-13190226IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEEEEDDDSA PFDADEFSAR GDSAGEETHV SKEIPGNVNR PCSASSSMSS SLIRRRTSEL  60
TIAFEGEVYV FPAVTPDKVQ AVLLLLGGRD VSTSVPTSEF LLQQRNMTLG DPSCGQKISH  120
RIASLVRFRE KRKERCFDKK IRYTCRKEVA QRMHRKNGQF VSLKDGFKLA AVNWDPNGGT  180
PPPQCVPRSC QHCGISEKST PAMRRGPSGP RTLCNACGLM WANKGTLRNL SKAGRIIPFQ  240
GDPDPPSDVK PLATEPDNSY VNQEMQRSPE EAKPLPSESG KTSTEDEQDF LENDEAVTND  300
SAVSLQNASV DLAEQEALEE VTNDSGTEFE IPTGFHESMG AFY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862458.10.0GATA transcription factor 28-like isoform X2
SwissprotQ8GXL71e-61GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0K9RKP20.0A0A0K9RKP2_SPIOL; Uncharacterized protein
STRINGXP_010691384.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.14e-64ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]