PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_054560_oaqg.t1
Common NameSOVF_054560
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 293aa    MW: 33447.4 Da    PI: 4.6852
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_054560_oaqg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-2069122356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+eq+  Le++F +++++ +e++ eLAkklgL+ rqV vWFqNrRa+ k
  Sp_054560_oaqg.t1  69 KKRRLTPEQVVLLEKCFDEEKKVEQERKSELAKKLGLQPRQVAVWFQNRRARSK 122
                        5678************************************************99 PP
2HD-ZIP_I/II107.88.2e-3568159192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ eqv lLE++F+ee+k+e+erK+ela++LglqprqvavWFqnrRAR k+kqlE+d +aLk+++ +l +e ++  ke + L+++++
  Sp_054560_oaqg.t1  68 EKKRRLTPEQVVLLEKCFDEEKKVEQERKSELAKKLGLQPRQVAVWFQNRRARSKSKQLERDLDALKASHHTLLSEYQSRLKERDLLKSKVD 159
                        69************************************************************************999998888888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1860126IPR009057Homeodomain-like
PROSITE profilePS5007117.57264124IPR001356Homeobox domain
SMARTSM003892.5E-1867128IPR001356Homeobox domain
CDDcd000868.33E-1769125No hitNo description
PfamPF000462.1E-1769122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1970131IPR009057Homeodomain-like
PRINTSPR000311.1E-695104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000311.1E-6104120IPR000047Helix-turn-helix motif
PfamPF021836.8E-9124166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MERDLDSGSL FFDSLANRTN MLFLGNTNLI FPGIRTTMIN MDKKRPFLNL PDEMINDDGY  60
YFDEQLPEKK RRLTPEQVVL LEKCFDEEKK VEQERKSELA KKLGLQPRQV AVWFQNRRAR  120
SKSKQLERDL DALKASHHTL LSEYQSRLKE RDLLKSKVDS LKEKLQSIKG EIEGPITSPI  180
ESLQVDGPTI QAQQQLSKIE DRSSSGSGDS AVVNEENNPQ NMIDSGTSYF DCHPPSPYMV  240
AVQSEEDDIS IDGRTNFSNI ITVAATVAND SDHHQLHEEE EEVGQGFGWW VWA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARSKSKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866780.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A0K9RKV60.0A0A0K9RKV6_SPIOL; Uncharacterized protein
STRINGVIT_14s0066g01440.t013e-80(Vitis vinifera)
STRINGEOY023594e-80(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-60homeobox 1