PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_052960_tidn.t1 | ||||||||
Common Name | SOVF_052960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 38807.6 Da PI: 6.6784 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.5 | 1.1e-56 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++k+ePwdLpk++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ Sp_052960_tidn.t1 17 LPPGFRFHPTDEELISHYLAPKVVDINFSA-KAIGEVDLNKCEPWDLPKRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI 107 79**************************99.88***************99999*************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ +++lvg+kktLvfykgrapkgek++Wvmheyrle Sp_052960_tidn.t1 108 YR-GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 143 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-65 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.359 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-29 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEKMVVIHGD DHEPMELPPG FRFHPTDEEL ISHYLAPKVV DINFSAKAIG EVDLNKCEPW 60 DLPKRAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYKGRAPKG EKSNWVMHEY RLEGKSSLQN LPSNAKNEWV ICRVFQKSAA GKKIPFHGII 180 QQESEFNPSS NLPPLMDYNT SYGAPHVPCF SNPPMEMETT TAHYQNTNQT SFEGLMSNPY 240 KSNNTGDNPY FSYFPSQTGN YSGNYMMSDQ HILKTILGTE MKQSMKTEVV NYSASQDTGL 300 SSDMNAEISS VVSNYDISRR AFDDHDGPST SGGPVDLDTL WY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021860565.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-128 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0K9RN47 | 0.0 | A0A0K9RN47_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678483.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-130 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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