PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_048620_tqpy.t1
Common NameSOVF_048620
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 323aa    MW: 35833.9 Da    PI: 4.797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_048620_tqpy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-112492891055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sp_048620_tqpy.t1 249 RKRRERINERLKILQTLVPNG-----TKVDISTMLEEAVQYVKFLQ 289
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.383239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14239305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-13244305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.87E-12248293No hitNo description
PfamPF000101.6E-8249289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEGGEWSNFN AGVCVNEEAD FMAQLFPSPN DINVNFIMAN ANNTNNNNNT EGGNSSYYSC  60
DSTSNSRNVY RYSQESSYNH EVHYHNYFSD NHLAVAAASN ASSLPIDFLH CHMEDEENGA  120
TMDNDNADLN EDESQMDPSE EDNKTCNTSY NSKKRGRVLE AVQKGKRSVR VKRSQSSLTL  180
GGGDGEENDG GTVNNIRQSS SCGSLEDDCS SKGTTTTTTT TTTNTILNSS GKTRASRGSA  240
TDPQSLYARK RRERINERLK ILQTLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSDEH  300
WMYAPIAYNG MNIGLDFHFN LPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852167.10.0transcription factor bHLH54-like
TrEMBLA0A0K9RPN20.0A0A0K9RPN2_SPIOL; Uncharacterized protein
STRINGXP_010687425.11e-140(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-54bHLH family protein