PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_048610_cqij.t1
Common NameSOVF_048610
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 331aa    MW: 36870.4 Da    PI: 4.6348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_048610_cqij.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-102572971055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Sp_048610_cqij.t1 257 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 297
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-14248311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-13252306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-12253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-12256301No hitNo description
PfamPF000101.0E-7257297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MMMDGGEWSS FNGVCVNDEA DFMAQLFPNC SLDNELESSS LVLSSSCYSG MTEGDNGSFF  60
STDENNSNLY CLSQGSSYSG SSSSNNIAYP YHENYHFFVA NNNDSSCHFP VDLCPSAAKN  120
FIQRLPAGNP METSDSLNLE MSCGGSFDDQ PEYSDNKHLQ LKQEYEIEPA SEDRSSHESA  180
RKRPRISEKG KRNIRTKKNQ KSSCDDQDNS ADLNKHNSSS SSEEEGSKET STTTVILNGK  240
TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAV QYVKFLQQQI  300
KLLSSDDLWM YAPLAYNGMD IGLDSKINSL L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852168.10.0transcription factor bHLH54-like
TrEMBLA0A0K9RMZ10.0A0A0K9RMZ1_SPIOL; Uncharacterized protein
STRINGXP_010687357.11e-158(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-46bHLH family protein