PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_046880_ogtm.t1 | ||||||||
Common Name | SOVF_046880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 25055.8 Da PI: 5.46 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.2 | 9e-21 | 16 | 69 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++f++eq++ Le +F++++ p ++++++A++lgL rqV+vWFqNrRa+ k Sp_046880_ogtm.t1 16 NKRRFSDEQIKSLELMFNSESRPGSKTKQRIANQLGLHPRQVSVWFQNRRARSK 69 5679************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 109.8 | 1.8e-35 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+k+LE +F++e++ ++ K+++a++Lgl+prqv vWFqnrRAR k+kq+E+dy+ Lk++yd+l+++ e L+ke+++L e+++ Sp_046880_ogtm.t1 16 NKRRFSDEQIKSLELMFNSESRPGSKTKQRIANQLGLHPRQVSVWFQNRRARSKSKQTERDYSILKAHYDSLASKFEVLKKENQTLIIEVQR 107 69************************************************************************************988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-17 | 7 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.6E-18 | 14 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.74E-15 | 17 | 72 | No hit | No description |
Pfam | PF00046 | 5.3E-18 | 17 | 69 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 18 | 78 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.6E-5 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.6E-5 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.2E-18 | 71 | 112 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDIDPVASEQ TNKNCNKRRF SDEQIKSLEL MFNSESRPGS KTKQRIANQL GLHPRQVSVW 60 FQNRRARSKS KQTERDYSIL KAHYDSLASK FEVLKKENQT LIIEVQRLRG LKERPKDSTS 120 DSAPATCSSN GESFSLSSPE KLIAKPEDYY TQDEILCNDK FEEFKSFEQE TNNQENFYMI 180 ESADDSLASS RNYSSVEPTY LMEHNCIPNW WELWV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 71 | RRARSKSKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856903.1 | 1e-160 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A0K9RNE3 | 1e-158 | A0A0K9RNE3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676907.1 | 4e-92 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-46 | homeobox 12 |