PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_046300_edek.t1
Common NameSOVF_046300
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ZF-HD
Protein Properties Length: 312aa    MW: 34060.8 Da    PI: 6.7962
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_046300_edek.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.41.2e-3150105359
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                        +vrY+eClkNhA+ +GghavDGCgEf+p+ g+eg+++al+CaAC+CHRnFHR+e ++
  Sp_046300_edek.t1  50 AVRYRECLKNHAVGIGGHAVDGCGEFLPA-GDEGSIDALRCAACNCHRNFHRKEYST 105
                        79**************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-2851102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2352102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-2952102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.47153102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.73E-18232303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-29233303IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-26242298IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMEFEEEHAE EEEEEEEEEE EEEDTEMAIT PIFKKQHNNL QNHHHHNAAA VRYRECLKNH  60
AVGIGGHAVD GCGEFLPAGD EGSIDALRCA ACNCHRNFHR KEYSTSASVV SSQLALYNPP  120
RPHHPHHPHH PHPRQLYQVY PYHHHVSAGG GHGHRPFASP SPTSAGPLNT NNNHHQEEPP  180
GSAGGVPGGG GVGDQMMMMM NSGGGGVGGG GGNVTGGVVG GGGTMSTMML SGGNNTSSSS  240
GKKRFRTKFT NEQKDKMLGL AERLGWRIQK QDEELVHQFC HEMGIKRNVL KVWMHNNKLT  300
LGKRTLITTP PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232432981873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850109.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2591e-62ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0K9RNS50.0A0A0K9RNS5_SPIOL; Uncharacterized protein
STRINGXP_010681042.12e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-26homeobox protein 22