PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_045540_ymir.t1
Common NameSOVF_045540
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family FAR1
Protein Properties Length: 689aa    MW: 78772.3 Da    PI: 7.0187
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_045540_ymir.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.92.1e-2072165190
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                        +fY+++Ak++GFs+r+++++ +    +  t+r fvC + g++  +  +++k +r+r+++r+gC+a l+++k++    ++w+vt ++ +HnH+
  Sp_045540_ymir.t1  72 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKVANENKPQRNRKSSRCGCQAYLRISKTTelgLSEWRVTGFVDHHNHD 163
                        6**************9998877356667999*****************9**********************9977779*************9 PP

               FAR1  89 la 90 
                        l 
  Sp_045540_ymir.t1 164 LL 165
                        96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1772165IPR004330FAR1 DNA binding domain
PfamPF105516.4E-20288378IPR018289MULE transposase domain
PROSITE profilePS509669.631563599IPR007527Zinc finger, SWIM-type
PfamPF044347.7E-7568597IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-5574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MSVVSVVDMG CDEDDRDSMV VYDDPSDERC LSLDDTSSAD DSANETGLTL EVTNDIVPYI  60
GQRFSSHDSA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKVANE  120
NKPQRNRKSS RCGCQAYLRI SKTTELGLSE WRVTGFVDHH NHDLLEPNQV RFLPAYRNIS  180
DTDKTRIFMY AKTGISVQQM MRLLELEKSV QPGYLPFTEK DVRNLIQSFR KMDPEEDTID  240
LLKMCTNIRD KDSNFRFDYT LDSNNNLENI SWSYASSVQA YQMFGDAVVF DTTHRLTSFD  300
MPLGIWVGIN NYGMPCFFAC VLMRQESLSS LSWALKVFVN FMNGKAPQTI LTDQNMFLKE  360
AVTVEMPTTK HVLCIWLVVA KFPSWFNAVL GERYNEWKAE FYRLYNLESV DEFELSWRDM  420
ISSFGLHTNR HIANLFALRS LWALSYLKSH FMAGLTTTSQ SKSINAFIQR FLSAQTRLAH  480
FVEQVAVAVD FKDQAGEQQT MQQNLQNISL KTGAPMETHA ASVLTPFAFS KLQEQLVLAA  540
HYASFQMEDG FLVRHHTKLQ GGQKVYWDPQ EGIVSCSCDQ FEFSGIICRH ALRVLSTGNC  600
FQIPERYLPL RWRRVNSSAS KPQGTLNDHG EKVQRLQSMV STLVSESSKS KERLDLATEQ  660
VSILLLRIRE QSVSTTLVSR DATMHRNFS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858317.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0K9RNV30.0A0A0K9RNV3_SPIOL; Uncharacterized protein
STRINGXP_010682037.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]