PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_042070_dnka.t1 | ||||||||
Common Name | SOVF_042070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 573aa MW: 65300.8 Da PI: 5.5449 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.1 | 8.8e-20 | 2 | 51 | 80 | 129 |
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g+Wkatg+dk+v++k+ +l+g++ktLv+ykgrap+g+k+dW+mheyrle Sp_042070_dnka.t1 2 AGFWKATGRDKAVYDKGFKLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 51 69**********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.247 | 1 | 71 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-23 | 2 | 71 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-8 | 3 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MAGFWKATGR DKAVYDKGFK LIGMRKTLVY YKGRAPNGQK SDWIMHEYRL ETDENGPPQE 60 EGWVVCRAFK KKTTIQSKTM ERWDSSSSSP SCMLYDHEPS GISSVIDPII IHNNGEFAMQ 120 RNRLLHKKSL CKEESLDQSW INFMHSTSSL DDSFLQLPQL ESPSSQPPFL KRVCTTTATA 180 TTAVTTTSQD WRELDQFVAS QLSEDALLLL HGSNNEREEL EEEKEKQVEA ITEIGFGGLL 240 SVHIPDINKK LICWILENFN SMGHMLQLGK GREYKIQLYD YDVYDVFDLP WVKDVDVEET 300 PRKRSEGDAT HAMLQRWFTK FNKKDTAQAP YLTELEIYLA NTDDYGDNFK RAFVIFALGV 360 YLAPTSNPML DIKLLKAVED VSRIAKQNWF KYVLNHLGSA VERWRENYGN SRVGGCLQFL 420 EIIYLQRSLF RGVTPRMEIP LVQHWFPAEV SARMIQFSIP EGIETNAEIE QVCNDELQSA 480 MKFYCRDLYV VSNFHQQRIN QIKANRRELS DRPGYGDPMF LEIVDSIVAY AVDLKKDNNV 540 GAGSDGDNPA VGGSGINVDV HGSTPKNAKD SGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-16 | 2 | 76 | 95 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-16 | 2 | 76 | 95 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-16 | 2 | 76 | 95 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-16 | 2 | 76 | 95 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-16 | 2 | 76 | 98 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-16 | 2 | 76 | 98 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-16 | 2 | 76 | 98 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-16 | 2 | 76 | 98 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-16 | 2 | 76 | 98 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-16 | 2 | 76 | 98 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-16 | 2 | 76 | 98 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-16 | 2 | 76 | 98 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-16 | 2 | 76 | 95 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-16 | 2 | 76 | 95 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB217775 | 2e-36 | AB217775.1 Zinnia elegans Ze567 mRNA for NAC-domain protein Ze567, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021836934.1 | 1e-164 | uncharacterized protein LOC110776693 | ||||
Refseq | XP_021850345.1 | 1e-166 | uncharacterized protein LOC110789932 | ||||
TrEMBL | A0A0K9RRL0 | 0.0 | A0A0K9RRL0_SPIOL; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 6e-49 | vascular related NAC-domain protein 1 |