PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_039500_miqj.t1 | ||||||||
Common Name | SOVF_039500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 27370.2 Da PI: 7.2193 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.2e-10 | 88 | 138 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h e+Er+RR ++ s + L++llP + ++K s ++ L +A +YIk++q Sp_039500_miqj.t1 88 IIHREIERKRRLEMSSLHASLKSLLPLeC---IKGKRSMSDHLGEAEKYIKQMQ 138 569************************88...********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.52E-8 | 83 | 142 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-12 | 84 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.712 | 85 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-9 | 89 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MFDPYCSQNN EIFFNISDCV PPNQLLGDQI IPSLEQHNDL DNLLNQIPTL VEDPNRSKRP 60 LASKLTSIDH DQGNDDLNPN DIKKRQKIIH REIERKRRLE MSSLHASLKS LLPLECIKGK 120 RSMSDHLGEA EKYIKQMQQK LQVLNDKRDD LRKEMSNYKR IEYENDVKVN VFKGSIEVIV 180 CTKEDDGLPL SKVLQCLDQQ GFDVVNSISK KVNANFVHSV HAQVSTYFVR LYSLHLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 97 | KKRQKIIHREIERKRR |
2 | 93 | 98 | ERKRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021844459.1 | 1e-163 | transcription factor bHLH118-like | ||||
TrEMBL | A0A0K9RQM7 | 1e-172 | A0A0K9RQM7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676605.1 | 3e-87 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 9e-21 | bHLH family protein |