PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_039000_drsn.t2
Common NameSOVF_039000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARR-B
Protein Properties Length: 571aa    MW: 63952.5 Da    PI: 5.8143
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_039000_drsn.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.8e-27330384156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k +++Wt++LH++Fv+aveqL G ++A+P++ilelmkv+gLt+++++SHLQkYR++
  Sp_039000_drsn.t2 330 KMKVDWTTDLHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNIASHLQKYRMH 384
                        5689*****************.********************************96 PP
2Response_reg28.57.9e-11201261109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        +l+ +++ + +  +++ le+ ++ +v ++++ +eal  +  k+  +++ ++ +++ + dG   +  +++++ +lp i+++ +   +++ +++
  Sp_039000_drsn.t2  20 ILLLEEDTNSAAEIKSKLEEMEF-IVIAFSSEDEALSAISSKNegFHVAIVEVSIHNPDGR--CNFMETAK-DLPTIMISKEHCLSTMMKCI 107
                        78889999999999*********.***************777777***************6..55555555.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                         +Ga +fl Kp ++++l++
  Sp_039000_drsn.t2 108 ALGAVEFLIKPLSEDKLRN 126
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.4E-1516140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.8E-1616143No hitNo description
SMARTSM004480.006618128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.5719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.29E-921131No hitNo description
PROSITE profilePS5129414.261327386IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-26328387IPR009057Homeodomain-like
SuperFamilySSF466891.67E-17329387IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-25330384IPR006447Myb domain, plants
PfamPF002498.4E-8333382IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MVCTANDLLE WKDFPKGLRI LLLEEDTNSA AEIKSKLEEM EFIVIAFSSE DEALSAISSK  60
NEGFHVAIVE VSIHNPDGRC NFMETAKDLP TIMISKEHCL STMMKCIALG AVEFLIKPLS  120
EDKLRNIWQH VVHKAFNTNE SPKSEPLKSV KEFVGSILEI QQQNIATQNK VSEEPILDTE  180
VDQSDHDHDH DHDQSGAGDK FPAPPSTPQI KQGGRSLDDG DFQDQMASGS PVKEGGEFEG  240
ENKSVDNSNN SDSLDKMEVD PPQPTTSEVG VAIKEEEDRG DGFRDTENSA PKNHANEDAT  300
TTTTTYVGHN NGISNKEPKH SRGKKGSRKK MKVDWTTDLH KKFVQAVEQL GVDQAIPSRI  360
LELMKVDGLT RHNIASHLQK YRMHRRHILP KQEERRWPHP RDSIQRNYYP QRPVMAYPPP  420
YHNNHNFVSG QVYPMWGQQG CQPPGYPMWG PTGYPWQPAE TWPWKAYPAM HADAWGCPVY  480
QQPSSYPSSA FPQQVQGAYG FHSIPLESHE SYGKNSADLN PGEEVIDKVV KEAISKPWLP  540
LPIGLKPPST DSVLAELSRQ GISIINGHHP C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-16327388263ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852979.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_021852992.10.0two-component response regulator-like APRR2 isoform X1
TrEMBLA0A0K9RR190.0A0A0K9RR19_SPIOL; Uncharacterized protein
STRINGXP_010677297.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-113ARR-B family protein