PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_039000_drsn.t1
Common NameSOVF_039000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARR-B
Protein Properties Length: 615aa    MW: 69142.6 Da    PI: 5.888
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_039000_drsn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33.1e-27374428156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k +++Wt++LH++Fv+aveqL G ++A+P++ilelmkv+gLt+++++SHLQkYR++
  Sp_039000_drsn.t1 374 KMKVDWTTDLHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNIASHLQKYRMH 428
                        5689*****************.********************************96 PP
2Response_reg28.38.9e-11641701109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        +l+ +++ + +  +++ le+ ++ +v ++++ +eal  +  k+  +++ ++ +++ + dG   +  +++++ +lp i+++ +   +++ +++
  Sp_039000_drsn.t1  64 ILLLEEDTNSAAEIKSKLEEMEF-IVIAFSSEDEALSAISSKNegFHVAIVEVSIHNPDGR--CNFMETAK-DLPTIMISKEHCLSTMMKCI 151
                        78889999999999*********.***************777777***************6..55555555.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                         +Ga +fl Kp ++++l++
  Sp_039000_drsn.t1 152 ALGAVEFLIKPLSEDKLRN 170
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.54E-1560184IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.7E-1660187No hitNo description
SMARTSM004480.006662172IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.5763176IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-864171IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.58E-965175No hitNo description
PROSITE profilePS5129414.261371430IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-26372431IPR009057Homeodomain-like
SuperFamilySSF466891.79E-17373431IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-25374428IPR006447Myb domain, plants
PfamPF002499.3E-8377426IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MFLAAFCNFN SLFLVLNILH AFFIFDLYEV NYRFATLLND AKRAMVCTAN DLLEWKDFPK  60
GLRILLLEED TNSAAEIKSK LEEMEFIVIA FSSEDEALSA ISSKNEGFHV AIVEVSIHNP  120
DGRCNFMETA KDLPTIMISK EHCLSTMMKC IALGAVEFLI KPLSEDKLRN IWQHVVHKAF  180
NTNESPKSEP LKSVKEFVGS ILEIQQQNIA TQNKVSEEPI LDTEVDQSDH DHDHDHDQSG  240
AGDKFPAPPS TPQIKQGGRS LDDGDFQDQM ASGSPVKEGG EFEGENKSVD NSNNSDSLDK  300
MEVDPPQPTT SEVGVAIKEE EDRGDGFRDT ENSAPKNHAN EDATTTTTTY VGHNNGISNK  360
EPKHSRGKKG SRKKMKVDWT TDLHKKFVQA VEQLGVDQAI PSRILELMKV DGLTRHNIAS  420
HLQKYRMHRR HILPKQEERR WPHPRDSIQR NYYPQRPVMA YPPPYHNNHN FVSGQVYPMW  480
GQQGCQPPGY PMWGPTGYPW QPAETWPWKA YPAMHADAWG CPVYQQPSSY PSSAFPQQVQ  540
GAYGFHSIPL ESHESYGKNS ADLNPGEEVI DKVVKEAISK PWLPLPIGLK PPSTDSVLAE  600
LSRQGISIIN GHHPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16371432263ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852979.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_021852992.10.0two-component response regulator-like APRR2 isoform X1
TrEMBLA0A0K9RR190.0A0A0K9RR19_SPIOL; Uncharacterized protein
STRINGXP_010677297.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-113ARR-B family protein