PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_038470_dfya.t1 | ||||||||
Common Name | SOVF_038470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 31063.3 Da PI: 6.2554 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.5e-13 | 86 | 138 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ h e+Er+RR+++ + ++ Lr+llP +K s ++ L++A++YIk+L+ Sp_038470_dfya.t1 86 KKVIHREVERQRRQEMSNLYSSLRSLLPMeY---VRGKRSVSDHLTEATRYIKDLE 138 5778*************************77...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.46E-15 | 84 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.846 | 85 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.03E-11 | 85 | 142 | No hit | No description |
Pfam | PF00010 | 1.2E-10 | 86 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.5E-12 | 87 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-6 | 91 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MFPFQSGELS FQVSNNNLED SNFLYNQLEQ NVSVPTTTTT NLLENPQHGL NPCLKSSKTR 60 KSRSEKSIQD NNNNGDEING NDNANKKVIH REVERQRRQE MSNLYSSLRS LLPMEYVRGK 120 RSVSDHLTEA TRYIKDLEKN VKEQGEKRDN LKHSFSSLEN QINNKRDNFQ CSSSTSTTTS 180 ASSSTSDYNV SIHKFSRTIQ IEITAGVEDE DPYPISKILK LLAQQGFDVV SCVTSKLNQR 240 WIYVIYCEVD DVTSVDSCHL QEKLMSVVSS NDT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021842274.1 | 0.0 | transcription factor bHLH118-like | ||||
TrEMBL | A0A0K9RR16 | 0.0 | A0A0K9RR16_SPIOL; Uncharacterized protein | ||||
STRING | XP_010693647.1 | 6e-98 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 9e-33 | bHLH family protein |