PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_033850_yene.t1

Common Name

SOVF_033850

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 799aa MW: 88207.6 Da PI: 7.9829

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_033850_yene.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	52	94	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a +q G++ +++I +++ + q++++++ + Sp_033850_yene.t1 52 AWTREEEESFFTALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 94 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.95E-10	45	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-5	47	97	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.289	48	99	IPR017884	SANT domain
SMART	SM00717	7.2E-5	49	97	IPR001005	SANT/Myb domain
CDD	cd00167	2.63E-5	52	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MQSTENAPLQ CLEHLSPGTD IEHNKEPPIL PSLSDNVVAP QPEKRPTRQW AAWTREEEES 60 FFTALRQVGK NFEKITCRVQ SKNKDQVRHY YYRLVRRMNK LLGPGFLDAK NSKDTNAAML 120 RWWSLLVKYS CKASKLHLKP RRYKIFVDTL EHQLMKDRKK NVKKQALQGD IYSSPSPPAT 180 NQNKLSANDA RAIKTVLVDC QNTQKAGPGR GSSTRRSLNI GVIHSSNKGE SSNTKPTRQR 240 RKSAAIKRWE KAAIAGVSLV ADAAEHLERT AGENHNAHQG SLNCAEQTHS GPSVPEQANS 300 SNISKSMAIE DNVQATMKLK LQLFPIDETT RKALEKDKHN PYLELTLSTR KKISSILEHL 360 DRKWGTSNVA SGELMLFPVH CQRENLVGYQ RWTRDSVVTA ADVYGVIGSP AVFRLRYGWI 420 SSIELQSGSS QTISVPSIDI DVQENSRREA LREQLLLPTG ETNMLDKVAD HFLGNHQISE 480 KQNSSIKELA AATSGVVNKN NVVDFSNDVF ETHNTGPSVV SKRNEACDGK SSKKNVDQRV 540 RKTPSLTTRE WADSLTNATD CDLITEDIDA MGANGVESPI FRSSRCAEAI PFTCDSFDAA 600 IAAHIYSQTK LGFSGPSSHS SSIWDAEETR DAFLFQNRAV ISNQVPSSTT TAASNAGTGF 660 FRTSSARTGT KAQDLHEEAM AEENIPEDPM DECPSETHKT GSSAKDFSCL TDIYWPDSLG 720 PLELDVPSCK SYSENLIFSD SMSGLNRLLA SSLDAFQNCP FYGLDEKRPS SPATVNQGGA 780 SFAGKFSKSD NAGVQSLQV

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MQSTENAPLQ CLEHLSPGTD IEHNKEPPIL PSLSDNVVAP QPEKRPTRQW AAWTREEEES  60
FFTALRQVGK NFEKITCRVQ SKNKDQVRHY YYRLVRRMNK LLGPGFLDAK NSKDTNAAML  120
RWWSLLVKYS CKASKLHLKP RRYKIFVDTL EHQLMKDRKK NVKKQALQGD IYSSPSPPAT  180
NQNKLSANDA RAIKTVLVDC QNTQKAGPGR GSSTRRSLNI GVIHSSNKGE SSNTKPTRQR  240
RKSAAIKRWE KAAIAGVSLV ADAAEHLERT AGENHNAHQG SLNCAEQTHS GPSVPEQANS  300
SNISKSMAIE DNVQATMKLK LQLFPIDETT RKALEKDKHN PYLELTLSTR KKISSILEHL  360
DRKWGTSNVA SGELMLFPVH CQRENLVGYQ RWTRDSVVTA ADVYGVIGSP AVFRLRYGWI  420
SSIELQSGSS QTISVPSIDI DVQENSRREA LREQLLLPTG ETNMLDKVAD HFLGNHQISE  480
KQNSSIKELA AATSGVVNKN NVVDFSNDVF ETHNTGPSVV SKRNEACDGK SSKKNVDQRV  540
RKTPSLTTRE WADSLTNATD CDLITEDIDA MGANGVESPI FRSSRCAEAI PFTCDSFDAA  600
IAAHIYSQTK LGFSGPSSHS SSIWDAEETR DAFLFQNRAV ISNQVPSSTT TAASNAGTGF  660
FRTSSARTGT KAQDLHEEAM AEENIPEDPM DECPSETHKT GSSAKDFSCL TDIYWPDSLG  720
PLELDVPSCK SYSENLIFSD SMSGLNRLLA SSLDAFQNCP FYGLDEKRPS SPATVNQGGA  780
SFAGKFSKSD NAGVQSLQV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021863254.1	0.0	TSL-kinase interacting protein 1 isoform X1
Refseq	XP_021863255.1	0.0	TSL-kinase interacting protein 1 isoform X1
TrEMBL	A0A0K9RSF9	0.0	A0A0K9RSF9_SPIOL; Uncharacterized protein
STRING	XP_010684064.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	TSL-kinase interacting protein 1