PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_030750_ggsh.t1
Common NameSOVF_030750
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28249.2 Da    PI: 9.4964
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_030750_ggsh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.39.6e-29959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtfskRr g+lKKA+E+S+LCda+v +iifs++gkl+ey+s
  Sp_030750_ggsh.t1  9 KRIENKINRQVTFSKRRIGLLKKAHEISILCDADVGLIIFSTKGKLFEYAS 59
                       79***********************************************86 PP
2K-box103.72.4e-34781744100
              K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                        ++ ++ + +   s++ e+akLk+++e Lq++qR+++Ge+L++LslkeLq+Le+qL+++lk+iRskKn++++e+i++lqkk k+lqe+n++L 
  Sp_030750_ggsh.t1  78 KQLTAPDPESRVSWTLEHAKLKARLEILQKNQRNYMGEELDTLSLKELQNLEHQLDSALKHIRSKKNQVMHESISQLQKKDKALQEHNNMLI 169
                        5555555556779******************************************************************************* PP

              K-box  96 kklee 100
                        kk++e
  Sp_030750_ggsh.t1 170 KKVKE 174
                        **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
CDDcd002652.66E-40279No hitNo description
SuperFamilySSF554552.88E-33292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.35388178IPR002487Transcription factor, K-box
PfamPF014862.8E-2790172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRIGLLK KAHEISILCD ADVGLIIFST KGKLFEYASD  60
SCMEKILERY ERYSYAEKQL TAPDPESRVS WTLEHAKLKA RLEILQKNQR NYMGEELDTL  120
SLKELQNLEH QLDSALKHIR SKKNQVMHES ISQLQKKDKA LQEHNNMLIK KVKEKEKALA  180
KQSETDQETY DLNSSGFLSQ ALPSLNTVGT CSSAVEDDQT TQQPSRTNNN STIMPSWMLR  240
HISEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-22184183MEF2 CHIMERA
6byy_B2e-22184183MEF2 CHIMERA
6byy_C2e-22184183MEF2 CHIMERA
6byy_D2e-22184183MEF2 CHIMERA
6bz1_A2e-22174173MEF2 CHIMERA
6bz1_B2e-22174173MEF2 CHIMERA
6bz1_C2e-22174173MEF2 CHIMERA
6bz1_D2e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7264860.0EU726486.2 Spinacia oleracea FRUITFULL (FUL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855267.10.0truncated transcription factor CAULIFLOWER A-like
SwissprotQ424291e-118AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A0K9RTD30.0A0A0K9RTD3_SPIOL; Uncharacterized protein
STRINGXP_010678364.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-97AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]