PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_029270_fytx.t1

Common Name

SOVF_029270

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 273aa MW: 31334.5 Da PI: 8.9714

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_029270_fytx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.4	1.6e-54	10	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+ +yLk+++ ++++++ ++i+evdiyk++Pw+Lp k++ +ekewyfF++rd+ky++g r+nrat sgyWkatg+dk++ Sp_029270_fytx.t1 10 LPPGFRFHPTDEELIIHYLKNQAMSRPCPV-SIIPEVDIYKFDPWQLPDKAEFGEKEWYFFTPRDRKYPNGIRPNRATLSGYWKATGTDKAI 100 79**************************.89***********99999*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s + + vg+kk Lvfykgr pkg+ktdW+mheyrl Sp_029270_fytx.t1 101 YS-GAKYVGIKKALVFYKGRPPKGSKTDWIMHEYRL 135 .999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-66	7	162	IPR003441	NAC domain
PROSITE profile	PS51005	61.331	10	162	IPR003441	NAC domain
Pfam	PF02365	3.2E-27	11	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDAKRCSSSL PPGFRFHPTD EELIIHYLKN QAMSRPCPVS IIPEVDIYKF DPWQLPDKAE 60 FGEKEWYFFT PRDRKYPNGI RPNRATLSGY WKATGTDKAI YSGAKYVGIK KALVFYKGRP 120 PKGSKTDWIM HEYRLTEAKH QPIKQNGSMR LDDWVLCRIY KKRHVVRAEE RTEELSSQQE 180 QVSMIGGAND VTITSNQNQQ EMKFPRTQSL SYLLDLDYLG PIAHLLNDNN SSFDIQTSMG 240 INAGFDPHVG PLSSYPNIGL SCHQTNGNQS YYK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-74	9	163	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-74	9	163	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-74	9	163	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-74	9	163	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-74	9	163	19	169	NAC domain-containing protein 19
3swm_B	7e-74	9	163	19	169	NAC domain-containing protein 19
3swm_C	7e-74	9	163	19	169	NAC domain-containing protein 19
3swm_D	7e-74	9	163	19	169	NAC domain-containing protein 19
3swp_A	7e-74	9	163	19	169	NAC domain-containing protein 19
3swp_B	7e-74	9	163	19	169	NAC domain-containing protein 19
3swp_C	7e-74	9	163	19	169	NAC domain-containing protein 19
3swp_D	7e-74	9	163	19	169	NAC domain-containing protein 19
4dul_A	6e-74	9	163	16	166	NAC domain-containing protein 19
4dul_B	6e-74	9	163	16	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00221	DAP	Transfer from AT1G69490	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021864198.1	0.0	NAC transcription factor 29-like
Refseq	XP_021864199.1	0.0	NAC transcription factor 29-like
Swissprot	K4BNG7	1e-119	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A0K9RTR3	0.0	A0A0K9RTR3_SPIOL; Uncharacterized protein
STRING	XP_010683140.1	1e-156	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-105	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]