PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_028340_qorz.t1
Common NameSOVF_028340
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 583aa    MW: 64483.7 Da    PI: 4.3177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_028340_qorz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.8e-53111381128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        l+pGfrFhPtdeelv++yL++kv+gk++++ ++i+e+diykveP+dLp  +k+k+++ ewyfFs  d+ky +g+r+nrat++gyWk+tgkd+
  Sp_028340_qorz.t1  11 LAPGFRFHPTDEELVWYYLRRKVSGKPFRV-DAISEIDIYKVEPSDLPglSKLKSRDLEWYFFSALDRKYGNGSRTNRATNEGYWKTTGKDR 101
                        579***************************.99***************6448888888********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v++ ++++vg+kktLv++kgrap+g +++Wvmhey+l
  Sp_028340_qorz.t1 102 PVCH-RSRVVGMKKTLVYHKGRAPRGARSNWVMHEYKL 138
                        ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-607161IPR003441NAC domain
PROSITE profilePS5100556.68611161IPR003441NAC domain
PfamPF023654.3E-2713138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGRNSPASTS LAPGFRFHPT DEELVWYYLR RKVSGKPFRV DAISEIDIYK VEPSDLPGLS  60
KLKSRDLEWY FFSALDRKYG NGSRTNRATN EGYWKTTGKD RPVCHRSRVV GMKKTLVYHK  120
GRAPRGARSN WVMHEYKLND EVIEKAGYSP DGFVLCRVFQ KSGTGPKNGE QYGAPLVEEE  180
WEDNSLGDVV PTEVSFEDPY VDDDAYIEQN DLDQVIDLQL PANAPCPVSF NPDDNYYYVE  240
DSLNVTGVDQ MSVVGESEDK YSLQVLDGQE FYDPGQDGSD SCLVKNEHMA QPNDVNNRTP  300
TNLLSSQDGS SAYLVKNEHM AQSNDLSNQA PVGLLDDLFS GIATPEDGLF LDAVDFLEPV  360
KDQHDFDVLG SYLDDDFDIG PYLNFDSSPE QMGDDADQGF SLKQNMIDAS WQIPSASQLL  420
HETGDDNIGS SSNQVMELSK AKPTKTDIQY PFLSQASHLL GNIPAPPAFA SEFPSKDVAA  480
RLSAAVQAST SVDVTAGMIR IRDMPTGVRG SGLQWSFDKT GNVNVLLSFD LPEVVNPVGL  540
ESFTGLWSTK ISTAASRGWL WFIPLVLFAL SVCVKVGTCM YAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4831617168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860945.10.0NAC domain-containing protein 53-like
TrEMBLA0A0K9RU350.0A0A0K9RU35_SPIOL; Uncharacterized protein
STRINGXP_010694513.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-117NAC domain containing protein 2