PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_023090_ietn.t1 | ||||||||
Common Name | SOVF_023090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 25312.1 Da PI: 9.6412 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.7 | 4.9e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs+tgklye++s Sp_023090_ietn.t1 9 KRIENDSSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPTGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 65.5 | 1.8e-22 | 84 | 176 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++++++ + +++++ L+k++++L+ ++R+llG++Les+s+ eLq Le+qL+ksl++iR+kKn l++ qi++l + ek l +en +L++kl Sp_023090_ietn.t1 84 SKVSDRNMLQFKEDANELEKKLKSLELSKRRLLGDSLESCSIDELQDLEKQLDKSLSTIRAKKNALFKVQIDKLYEEEKLLLKENARLKEKL 175 3388999999********************************************************************************99 PP K-box 99 e 99 + Sp_023090_ietn.t1 176 Q 176 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.5E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.777 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-32 | 3 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.34E-40 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 4.4E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.5E-22 | 90 | 175 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.74 | 91 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVRGKTQMKR IENDSSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP TGKLYEFASS 60 RCCSTSRTID RYQKHMKELR GVKSKVSDRN MLQFKEDANE LEKKLKSLEL SKRRLLGDSL 120 ESCSIDELQD LEKQLDKSLS TIRAKKNALF KVQIDKLYEE EKLLLKENAR LKEKLQNSLP 180 VPLSVRQPTD DDQRNNVQDD VETELFIGLP ESRNSRCLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 1e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 1e-18 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 1e-18 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 2e-49 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 2e-49 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021844484.1 | 1e-151 | agamous-like MADS-box protein AGL19 | ||||
Swissprot | Q9XJ60 | 1e-72 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A0K9RW27 | 1e-155 | A0A0K9RW27_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676581.1 | 1e-110 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-53 | AGAMOUS-like 20 |