PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_017560_cwtt.t1

Common Name

SOVF_017560

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 452aa MW: 48119.2 Da PI: 6.712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_017560_cwtt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	259	304	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Sp_017560_cwtt.t1 259 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 304 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.87E-12	252	308	No hit	No description
SuperFamily	SSF47459	1.96E-16	252	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.964	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	256	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-9	259	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-13	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MEGGGMQHSH SHCQVSLDDL QQNGESQSQQ QHQYQESQND DFLDQMLSTI PNCSWPPTPH 60 DLPSPTSNPN LSLKPGDSPP DDREVAAAAF QYPFDEASLV SKLRQQQHQQ QMNEVTAKSL 120 LLQHQQQFLL SRRSPGDTAP AGPGMLPLPL SLGNNDSGVD PSSFKSQVGT EASVQALYNG 180 FGGSLHANAQ PPNQQHFHPP PPPPPPQGGN LTGGQNYGGQ GAGMNGAPPA SASTGGSSGA 240 GAPQRQRVRA RRGQATDPHS IAERLRRERI AERMKGLQEL VPNANKTDKA SMLDEIIDYV 300 KFLQLQVKVL SMSRLGGAAA VAPLVAASEG GAAGRSSNGN QTASGNDSMS ITEHQVAKLM 360 EEDMGSAMQY LQGKGLCLMP ISLATAISTA TSLNRSPLPP PRPHINNNTN HHDIHHHHHH 420 PLIPPPIPSS NVEGDNNKGK PTSDSSVKDP SN

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MEGGGMQHSH SHCQVSLDDL QQNGESQSQQ QHQYQESQND DFLDQMLSTI PNCSWPPTPH  60
DLPSPTSNPN LSLKPGDSPP DDREVAAAAF QYPFDEASLV SKLRQQQHQQ QMNEVTAKSL  120
LLQHQQQFLL SRRSPGDTAP AGPGMLPLPL SLGNNDSGVD PSSFKSQVGT EASVQALYNG  180
FGGSLHANAQ PPNQQHFHPP PPPPPPQGGN LTGGQNYGGQ GAGMNGAPPA SASTGGSSGA  240
GAPQRQRVRA RRGQATDPHS IAERLRRERI AERMKGLQEL VPNANKTDKA SMLDEIIDYV  300
KFLQLQVKVL SMSRLGGAAA VAPLVAASEG GAAGRSSNGN QTASGNDSMS ITEHQVAKLM  360
EEDMGSAMQY LQGKGLCLMP ISLATAISTA TSLNRSPLPP PRPHINNNTN HHDIHHHHHH  420
PLIPPPIPSS NVEGDNNKGK PTSDSSVKDP SN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	268	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021845950.1	0.0	transcription factor bHLH10-like
Swissprot	Q9ZUG9	1e-80	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0K9RXN1	0.0	A0A0K9RXN1_SPIOL; Uncharacterized protein
STRING	XP_010682674.1	1e-172	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-48	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]