PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_011740_wieo.t1 | ||||||||
Common Name | SOVF_011740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 231aa MW: 25167.4 Da PI: 10.324 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 231.4 | 6.9e-71 | 78 | 231 | 144 | 301 |
GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235 ++e ++ k+pk++ +++ k+++ + kk ++++a+ ++ k+ ++ n s + s++P+P+CsCtGa rqCY+WG+GGWqS+CC Sp_011740_wieo.t1 78 ITEPPSI----PIKNPKRNPIDAALKEPKPKIKKGRSSKAKGGGARKNKNPNFHNNDSSTEASGIPAPICSCTGAARQCYRWGSGGWQSSCC 165 2222222....345555555555555444444555555555456677889999*************************************** PP GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 tt+iS yPLP+s++r gaR agrKmS+ga+ klL++L+aeGydl p+DLkdhWAkHGtnkfvti+ Sp_011740_wieo.t1 166 TTNISEYPLPMSATRAGARTAGRKMSHGAYDKLLQRLSAEGYDLEFPIDLKDHWAKHGTNKFVTIK 231 *****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 9.9E-62 | 22 | 231 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 5.6E-65 | 89 | 231 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGTFRSNYPI IPEGNRTRSV PHFSWFHPGS YLSATTRNGF SPFQGTQNNP DGGLPAVPIR 60 CMPINEPTNV VADAQTQITE PPSIPIKNPK RNPIDAALKE PKPKIKKGRS SKAKGGGARK 120 NKNPNFHNND SSTEASGIPA PICSCTGAAR QCYRWGSGGW QSSCCTTNIS EYPLPMSATR 180 AGARTAGRKM SHGAYDKLLQ RLSAEGYDLE FPIDLKDHWA KHGTNKFVTI K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021851654.1 | 1e-173 | protein BASIC PENTACYSTEINE7-like | ||||
Swissprot | O82286 | 3e-53 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A0A0K9RZC6 | 1e-171 | A0A0K9RZC6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677416.1 | 1e-122 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 1e-45 | basic pentacysteine 7 |