PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_009550_amof.t2
Common NameSOVF_009550
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 1081aa    MW: 119340 Da    PI: 6.5103
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_009550_amof.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.1e-22144245199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  Sp_009550_amof.t2 144 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--R 232
                        99*****************************9445444.38************************************************..5 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++++l+++++r+
  Sp_009550_amof.t2 233 DEKQHLLLGIRRA 245
                        689999****997 PP
2Auxin_resp120.51.3e-39270353183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Sp_009550_amof.t2 270 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAIYgQQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 353
                        79**********************************99********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-43134273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-41138259IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-18143244No hitNo description
SMARTSM010192.9E-22144246IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773144246IPR003340B3 DNA binding domain
PfamPF023623.2E-20144245IPR003340B3 DNA binding domain
PfamPF065071.6E-34270353IPR010525Auxin response factor
PROSITE profilePS5174525.4749691053IPR000270PB1 domain
PfamPF023098.7E-89691054IPR033389AUX/IAA domain
SuperFamilySSF542771.08E-69831046No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1081 aa     Download sequence    Send to blast
MKGTAANSAS QPSNNSPTEG EKKTINQELW QACAGPLVNL PAAGTHVVYF PQGHSEQGFP  60
DPPFPSSSSV AASLKKDVDA QIPNYTNLPA KLLCLLHNVT LHADPETDEV YAQMTLQPVP  120
SFDKEALLRS DLSLKVHKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP  180
AQELVARDLH DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQHLLL  240
GIRRANRQPT NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY  300
YKAIYGQQVS LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST  360
AGERRNRVSV WEIEPVTAPF FICPPPFLRP KRPRLPGMPD DESDVDNLYK RTMPWLGDDP  420
HALSGLSLAQ WMNMPQNQSF ANSMQGNYLN TIPGSTLPSL PGATAELSRQ LGFTAPQQNN  480
LQYNAQRPVQ SVQQHDQLQK QSGALNPLSS LIQSQSQQQL YDVSQQNLNQ NLSSSQVQSQ  540
LLQSQGLVQN HSSLQQPSSL QNHQLLGNLP PQQQQTSGSS QQPSLLQMQQ VNNDNQMQFQ  600
LLQRFQQQQS LLSQHSVLQQ TNHINQLQEP QHRSLLDVSQ SFSRSLSSSQ MLDMPMASLP  660
PSQIIPQQLS RSNSQTTLHF SQTPQLPKLP EQQSGIMPEM HGVALNPMSN HPSTAVSSSF  720
VRATAGGQSA VTDDIPSCST SPSTNNGPNI PQTTMNYRSY ALGEGINQSS ANVLSSNSLD  780
TMSAHNSFKE LHQKVEVKPS VNISKVENQG HLTYQNIPMD YLDTSSATSV SLSQNDIINQ  840
NSSLCNPQSS LLGDTTGHDV EVQAADVRNN IHNGASINGQ LGTSLVSDAI LTKNVQRPDK  900
NYSNNVSSGC MLTTYENSKD AQQELSSSMV TQSFGVPDVA FNSIDSAISD GSFMNRGAWA  960
PPPQFQRLRT YTKVYKRGAV GRSIDVTRYS DYEELKQDLA RMFGIEGQME DRGRVGWKLV  1020
YVDHENDVLL VGDDPWEDFV NCVRCVKILS PQEVQQMSLD GDFGNASLQN QACSSSDGGN  1080
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1642137447388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844074.10.0auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0K9S1S20.0A0A0K9S1S2_SPIOL; Auxin response factor
STRINGXP_010669598.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19