PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_009550_amof.t1
Common NameSOVF_009550
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 1069aa    MW: 118137 Da    PI: 6.569
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_009550_amof.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.74e-22132233199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  Sp_009550_amof.t1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--R 220
                        99*****************************9445444.38************************************************..5 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++++l+++++r+
  Sp_009550_amof.t1 221 DEKQHLLLGIRRA 233
                        689999****997 PP
2Auxin_resp120.61.2e-39258341183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Sp_009550_amof.t1 258 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAIYgQQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 341
                        79**********************************99********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-43122261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-41126247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-18131232No hitNo description
PROSITE profilePS5086311.773132234IPR003340B3 DNA binding domain
SMARTSM010192.9E-22132234IPR003340B3 DNA binding domain
PfamPF023623.2E-20132233IPR003340B3 DNA binding domain
PfamPF065071.5E-34258341IPR010525Auxin response factor
PROSITE profilePS5174525.4749571041IPR000270PB1 domain
PfamPF023098.5E-89571042IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-79711034No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MKGTAANSAS QPSNNSPTEG EKKTINQELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA  60
SLKKDVDAQI PNYTNLPAKL LCLLHNVTLH ADPETDEVYA QMTLQPVPSF DKEALLRSDL  120
SLKVHKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELVARDLHDT  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQHLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AIYGQQVSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG ERRNRVSVWE  360
IEPVTAPFFI CPPPFLRPKR PRLPGMPDDE SDVDNLYKRT MPWLGDDPHA LSGLSLAQWM  420
NMPQNQSFAN SMQGNYLNTI PGSTLPSLPG ATAELSRQLG FTAPQQNNLQ YNAQRPVQSV  480
QQHDQLQKQS GALNPLSSLI QSQSQQQLYD VSQQNLNQNL SSSQVQSQLL QSQGLVQNHS  540
SLQQPSSLQN HQLLGNLPPQ QQQTSGSSQQ PSLLQMQQVN NDNQMQFQLL QRFQQQQSLL  600
SQHSVLQQTN HINQLQEPQH RSLLDVSQSF SRSLSSSQML DMPMASLPPS QIIPQQLSRS  660
NSQTTLHFSQ TPQLPKLPEQ QSGIMPEMHG VALNPMSNHP STAVSSSFVR ATAGGQSAVT  720
DDIPSCSTSP STNNGPNIPQ TTMNYRSYAL GEGINQSSAN VLSSNSLDTM SAHNSFKELH  780
QKVEVKPSVN ISKVENQGHL TYQNIPMDYL DTSSATSVSL SQNDIINQNS SLCNPQSSLL  840
GDTTGHDVEV QAADVRNNIH NGASINGQLG TSLVSDAILT KNVQRPDKNY SNNVSSGCML  900
TTYENSKDAQ QELSSSMVTQ SFGVPDVAFN SIDSAISDGS FMNRGAWAPP PQFQRLRTYT  960
KVYKRGAVGR SIDVTRYSDY EELKQDLARM FGIEGQMEDR GRVGWKLVYV DHENDVLLVG  1020
DDPWEDFVNC VRCVKILSPQ EVQQMSLDGD FGNASLQNQA CSSSDGGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682136247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844074.10.0auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0K9S0970.0A0A0K9S097_SPIOL; Auxin response factor
STRINGXP_010669598.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19