PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_006520_ejaj.t1
Common NameSOVF_006520
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 522aa    MW: 57149.6 Da    PI: 9.1965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_006520_ejaj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011400422123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+C ++F++   L  H r+H
  Sp_006520_ejaj.t1 400 HECPICYRVFPSGQALGGHKRSH 422
                        79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.11E-5535No hitNo description
PfamPF139123.3E-4831IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829835IPR007087Zinc finger, C2H2
SMARTSM003550.53830IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
PROSITE profilePS501579.536322344IPR007087Zinc finger, C2H2
PfamPF139124.8E-12322346IPR007087Zinc finger, C2H2
SMARTSM003550.06322344IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.09E-6322344No hitNo description
PROSITE patternPS000280324344IPR007087Zinc finger, C2H2
SuperFamilySSF576674.09E-6395422No hitNo description
PfamPF139124.2E-13399422IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891400422IPR007087Zinc finger, C2H2
SMARTSM003550.16400422IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280402422IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEQQKRKHVC KFCKKSFPCG RSLGGHIRSH LPKPGYELRE NPKKTWRSVA AADDHEHDHD  60
QEDYHHNTII NSSFSSSSAE TENPNPKPRQ MNQNHGKRSR NNNSQSSVSE VVEAEQHHEQ  120
GEEVVVAMCL IMLSRDVGSW GGASYSFAAA AAAAETSAVA DSNTSKSSKS RKRREKVQGN  180
GSVSAADKKH ESVPSGCLQK QLKMKGIDVT VNGFGSNDEK NKSKIIKMES AASGFFKDGV  240
KIKEFEKVSE NGISSHDQNK QTPESKRKFI DQSAASGNGK KASKTLEFEV SENGISSYDQ  300
KSSDLDVFDS EFYSSMSKRS KFECTTCNKV FHSYQALGGH RASHKKNGGG IKCSPPPLLK  360
LEAEADIGGD TPRKQPQPPK EVGVIIRSPS SPPKKVVQRH ECPICYRVFP SGQALGGHKR  420
SHLLVSSSSS TSSNNNQTST IIADVVERLS SKEITRDLLD LNFPPAPVHD ETTTTTTTTT  480
TTTVTTTTTP SSTTSLVGFM KPYWCVESSH HKHEQLLGLI SN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850237.10.0uncharacterized protein LOC110789850
TrEMBLA0A0K9S1440.0A0A0K9S144_SPIOL; Uncharacterized protein
STRINGXP_010678415.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-23C2H2-like zinc finger protein