PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_004370_hrut.t1
Common NameSOVF_004370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 381aa    MW: 43371 Da    PI: 4.7146
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_004370_hrut.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1958111356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Sp_004370_hrut.t1  58 KKRRLSVDQVKALERNFEVENKLEPERKVQLAQELGLKPRQVAVWFQNRRARWK 111
                        566899***********************************************9 PP
2HD-ZIP_I/II128.82.3e-4157149193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLgl+prqvavWFqnrRAR+ktkqlE+dy +Lk+++d+lk++ e+L++++++L +e+k
  Sp_004370_hrut.t1  57 EKKRRLSVDQVKALERNFEVENKLEPERKVQLAQELGLKPRQVAVWFQNRRARWKTKQLERDYGVLKSSFDNLKQNFESLQHDKDALLKEIK 148
                        69**************************************************************************************9998 PP

        HD-ZIP_I/II  93 e 93 
                        e
  Sp_004370_hrut.t1 149 E 149
                        7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.3E-1938115IPR009057Homeodomain-like
PROSITE profilePS5007117.28153113IPR001356Homeobox domain
SMARTSM003891.1E-1756117IPR001356Homeobox domain
PfamPF000462.1E-1658111IPR001356Homeobox domain
CDDcd000867.06E-1558114No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2060120IPR009057Homeodomain-like
PRINTSPR000318.3E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000318.3E-693109IPR000047Helix-turn-helix motif
PfamPF021833.4E-17113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MKRTRSSDSL GALISIQEEH SPRNNNNIYS NRDYQSMMLE SLVDEEGCIE EIGHIPEKKR  60
RLSVDQVKAL ERNFEVENKL EPERKVQLAQ ELGLKPRQVA VWFQNRRARW KTKQLERDYG  120
VLKSSFDNLK QNFESLQHDK DALLKEIKEL KSKLGEDRVS KEEEALLFES ENINMNDDDE  180
DDIEPITPPA ESLSGGGGGG GDGGGGSENA KLLKVQNMFA KFKDGGPSDS DSSAILNDDN  240
NNSNSPNASN SSSEPIFQNH QQQQQQQQQQ HHQQQQQLLM SPSSSSFRFN SSSPSPPSIN  300
CFDFSRLDEM RTTQNHNNNN NNNNNNNNNN SNNNSNNSNN VYHPQFVKIE EHNFFSGEEA  360
CNFFSEEQAP SLHWYCPDQW T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
2193206SGGGGGGGDGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852205.10.0homeobox-leucine zipper protein ATHB-16-like
TrEMBLA0A0K9S1U20.0A0A0K9S1U2_SPIOL; Uncharacterized protein
STRINGXP_010681015.11e-135(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-51homeobox protein 6