PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof021181
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 213aa    MW: 23070.5 Da    PI: 9.8826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17312217PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10134184154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +rr+h ++Er+RR++iN+ ++ Lr+ +       +++ + a+i+  A++++++L
  Sof021181 134 QRRNHIAVERNRRRQINEYLSVLRSRMXAF---LAQRGDQASIVAGAINFVQEL 184
                79***************************6...69***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.77E-11132189No hitNo description
Gene3DG3DSA:4.10.280.101.6E-10132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-14133204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.745133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-6139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MALEAVVFPK EHLACTVKAR SASLGCGFHT EELEDKGGVV LQGDAADALP PGAGAATTWE  60
WDAVLCPCST APGGAVEECW DVQHPLSVFP APXVPSAVAA SSSARGKAAA ASAAARKRRR  120
TPKAVKNTEE MESQRRNHIA VERNRRRQIN EYLSVLRSRM XAFLAQRGDQ ASIVAGAINF  180
VQELGHLVHS LEGQKRRPGV CTNHRRPLRR FFX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119RKRRR
2115120RKRRRT
3135145RNHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.192000.0crown| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314326.15e-92transcription factor bHLH94-like
TrEMBLA0A194YR511e-90A0A194YR51_SORBI; Uncharacterized protein
TrEMBLA0A194YSA27e-91A0A194YSA2_SORBI; Uncharacterized protein
STRINGSb04g027280.12e-91(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.15e-26bHLH family protein