PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof020647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | ERF | ||||||||
Protein Properties | Length: 102aa MW: 11246.5 Da PI: 12.5145 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.8 | 1.7e-10 | 59 | 92 | 1 | 36 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 + ++GVr++ grWv+e+r+p ++g +r +lg++ Sof020647 59 PVFRGVRRRGAAGRWVCEVRVPXKRG--ARLWLGTY 92 579******************98876..*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-6 | 59 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.224 | 60 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-14 | 60 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-8 | 60 | 101 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MDMGRLQQHA TSSSSTSTSA SSSSSKQNKA VWTPSSSSSP QPPKKRPAGR TKFRETRHPV 60 FRGVRRRGAA GRWVCEVRVP XKRGARLWLG TYLAAEPPVR AH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.23686 | 1e-143 | bud| crown |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957402.1 | 7e-37 | dehydration-responsive element-binding protein 1H | ||||
Swissprot | A2Z389 | 4e-31 | DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A | ||||
TrEMBL | A0A3L6G6D6 | 8e-37 | A0A3L6G6D6_MAIZE; Dehydration-responsive element-binding protein 1H | ||||
STRING | Si030869m | 3e-36 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 1e-13 | dehydration response element B1A |