PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof020637 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | SBP | ||||||||
Protein Properties | Length: 103aa MW: 10477.9 Da PI: 10.9831 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.9 | 2.8e-23 | 53 | 103 | 1 | 50 |
--SSTT-----.TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 1 lCqvegCeadl.seakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 +Cq+e+C+a+l ++ k y+rrhkvCe+hskapvvlv+gl+qrfCqqCsrfh Sof020637 53 RCQAERCNANLmTDEKPYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFH 103 6*********735789**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-24 | 49 | 103 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.085 | 51 | 103 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-21 | 52 | 103 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-17 | 54 | 103 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MAAVGDAFSS SPVAARRGVA AGGAASSSSP VPVAARRGAA AAASVAAGGG GPRCQAERCN 60 ANLMTDEKPY NRRHKVCEAH SKAPVVLVAG LRQRFCQQCS RFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-18 | 46 | 103 | 2 | 59 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.22215 | 1e-177 | inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462902.1 | 2e-33 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q38741 | 3e-20 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A3L6FUY8 | 3e-33 | A0A3L6FUY8_MAIZE; Squamosa promoter-binding-like protein 13 | ||||
STRING | Sb02g034180.1 | 8e-33 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-18 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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