PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020406
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 111aa    MW: 12534.4 Da    PI: 11.3056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-122261PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-201263156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++y+GVr ++ +gr++AeIrdps+   r+r++lg+f++ae Aa+a++ a+++l+g+
  Sof020406 12 PRYRGVRKRP-WGRFAAEIRDPSK---RARVWLGTFDSAEAAARAYDVAARALRGP 63
               68********.**********975...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.10E-171266No hitNo description
PfamPF008472.0E-141262IPR001471AP2/ERF domain
SMARTSM003809.6E-301376IPR001471AP2/ERF domain
PROSITE profilePS5103222.2731372IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-201367IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-271367IPR001471AP2/ERF domain
PRINTSPR003678.3E-111425IPR001471AP2/ERF domain
PRINTSPR003678.3E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MCDAAAVAVA VPRYRGVRKR PWGRFAAEIR DPSKRARVWL GTFDSAEAAA RAYDVAARAL  60
RGPLARNKYT RPPTQTHHTA NPTPTITLAY TTHKKQFNIF SPPTYKYYAL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18665767Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.97871e-64crown| inflorescence| leaf| meristem| stem
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148189.22e-26uncharacterized protein LOC100281797
RefseqXP_020589170.12e-26ethylene-responsive transcription factor CRF4-like
RefseqXP_020589171.12e-26ethylene-responsive transcription factor CRF4-like
RefseqXP_026396326.11e-26ethylene-responsive transcription factor 3-like
SwissprotQ9LDE44e-27ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A3L6PSP21e-31A0A3L6PSP2_PANMI; Ethylene-responsive transcription factor 7-like
STRINGCagra.0316s0033.1.p2e-25(Capsella grandiflora)
STRINGGorai.002G092900.11e-25(Gossypium raimondii)
STRINGAT3G20310.12e-25(Arabidopsis thaliana)
STRINGPavir.Ga00187.1.p6e-26(Panicum virgatum)
STRINGPavir.Gb00092.1.p6e-26(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.18e-19ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]