PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof020240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 117aa MW: 13406.5 Da PI: 11.9752 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.5 | 3.2e-20 | 12 | 97 | 21 | 96 |
NAM 21 kkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyWkatgkdkevlskk 96 ++v g++l++ ++i+evd+y++ePwdLp +++++++ +wyfF++ d+k a g+r+nrat +gyWk+tgkd+ev++++ Sof020240 12 RRVLGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVAgagaggrggPGNRTNRATPRGYWKTTGKDREVHHRG 97 6788899999.89***************5448999999***********99877777665577********************9963 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.993 | 1 | 117 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-20 | 11 | 98 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-4 | 33 | 94 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MSHHRSTPPP RRRVLGRRLR VDAIAEVDLY RLEPWDLPSL SRIRSRDAQW YFFARLDRKV 60 AGAGAGGRGG PGNRTNRATP RGYWKTTGKD REVHHRGKPR RDEEDASLSR REGAXGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-15 | 12 | 98 | 35 | 110 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.15465 | 1e-163 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314954.1 | 5e-55 | NAC domain-containing protein 78 isoform X3 | ||||
Swissprot | Q9SQX9 | 2e-24 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | A0A1Z5RQE5 | 1e-53 | A0A1Z5RQE5_SORBI; Uncharacterized protein | ||||
STRING | Sb04g037720.1 | 3e-54 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 4e-18 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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