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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sof020050 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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| Family | bHLH | ||||||||
| Protein Properties | Length: 124aa MW: 14047.2 Da PI: 4.8064 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 15 | 4.5e-05 | 11 | 28 | 38 | 55 |
STCHHHHHHHHHHHHHHH CS
HLH 38 lsKaeiLekAveYIksLq 55
++Ka+i + A+eYI +Lq
Sof020050 11 MDKASIIKDAIEYIEQLQ 28
68***************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.53E-6 | 8 | 42 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.2E-8 | 10 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 124 aa Download sequence Send to blast |
QHAPVCIALQ MDKASIIKDA IEYIEQLQAE ERRMLQEVRA LEADAAEERC DYEYDEGALP 60 QAAERGKKRM KRTQSVPSSS VPAPVEVLEL RVSEVGDRVL VVNVTLFLVL RPLPAIIFPP 120 RYSW |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002445107.1 | 2e-38 | transcription factor bHLH35 | ||||
| TrEMBL | C5YHE6 | 4e-37 | C5YHE6_SORBI; Uncharacterized protein | ||||
| STRING | Sb07g004190.1 | 7e-38 | (Sorghum bicolor) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G57150.4 | 1e-08 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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