PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G57150.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 30450.2 Da PI: 7.9039 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.3e-13 | 58 | 101 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr+++P+ +K++Ka+i + A+ YI Lq AT5G57150.4 58 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIEGLQ 101 57*********************7.....7****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.796 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.32E-12 | 54 | 101 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-17 | 54 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-17 | 57 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-14 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-11 | 58 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MEDIVDQELS NYWEPSSFLQ NEDFEYDRSW PLEEAISGSY DSSSPDGAAS SPASKNIVSE 60 RNRRQKLNQR LFALRSVVPN ITKMDKASII KDAISYIEGL QYEEKKLEAE IRELESTPKS 120 SLSFSKDFDR DLLVPVTSKK MKQLDSGSST SLIEVLELKV TFMGERTMVV SVTCNKRTDT 180 MVKLCEVFES LNLKILTSNL TSFSGMIFHT VFIELRPNIY WVVWFLVFMS IFGPTIIVIW 240 SIWFIKKKII LSLWRMKKNK RCCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 56 | 110 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 56 | 110 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 56 | 110 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 56 | 110 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 56 | 110 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 56 | 110 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 56 | 110 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 56 | 110 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.49181 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 247945_at | 0.0 | ||||
Expression Atlas | AT5G57150 | - | ||||
AtGenExpress | AT5G57150 | - | ||||
ATTED-II | AT5G57150 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G57150.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G57150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058072 | 0.0 | AY058072.1 Arabidopsis thaliana AT5g57150/MUL3_10 mRNA, complete cds. | |||
GenBank | AY136380 | 0.0 | AY136380.1 Arabidopsis thaliana putative protein (At5g57140) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190556.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q2HIV9 | 1e-154 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | F4KAJ5 | 0.0 | F4KAJ5_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | AT5G57150.4 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6367 | 27 | 45 | Representative plant | OGRP2753 | 13 | 32 |
Link Out ? help Back to Top | |
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Phytozome | AT5G57150.4 |
Entrez Gene | 835821 |
iHOP | AT5G57150 |
wikigenes | AT5G57150 |