PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 129aa MW: 15126.4 Da PI: 10.4654 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148 | 4.7e-46 | 9 | 129 | 1 | 121 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGf FhP+d el+++yLk+k+ g+k+e + i+evdiyk+ePwdLp+ ++ ++++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd++++ +++ Sof019863 9 LPPGFGFHPSDPELISHYLKRKILGQKIEY-DLIPEVDIYKHEPWDLPAkcNLPIKDNKWHFFASRDRKYPTGSRSNRATLAGYWKSTGKDRAIKL-NKR 106 79***************************9.99***************6244555999**************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdW 121 + g+kktLvf++gr p+g++t+W Sof019863 107 TLGTKKTLVFHEGRPPSGRRTEW 129 *********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-48 | 4 | 129 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.792 | 9 | 129 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-20 | 10 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEVLRDMHLP PGFGFHPSDP ELISHYLKRK ILGQKIEYDL IPEVDIYKHE PWDLPAKCNL 60 PIKDNKWHFF ASRDRKYPTG SRSNRATLAG YWKSTGKDRA IKLNKRTLGT KKTLVFHEGR 120 PPSGRRTEW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-42 | 6 | 129 | 12 | 133 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.9255 | 0.0 | callus| meristem| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312344.1 | 1e-93 | NAC domain-containing protein 74 | ||||
Swissprot | Q7GCL7 | 9e-79 | NAC74_ORYSJ; NAC domain-containing protein 74 | ||||
TrEMBL | A0A1B6Q2Q7 | 3e-92 | A0A1B6Q2Q7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g010130.1 | 6e-93 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 6e-56 | NAC domain containing protein 86 |
Publications ? help Back to Top | |||
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