PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof019780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 131aa MW: 14004.9 Da PI: 10.8441 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 57.6 | 5e-18 | 57 | 98 | 2 | 43 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdk 43 + k+++++++hT v+ R+RR+R++a caar+ +L++eLG++ Sof019780 57 PXKRTSTKDRHTXVDXRGRRIRMPAICAARVVQLTRELGHKD 98 689*************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.4E-13 | 61 | 98 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 8.612 | 63 | 117 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 131 aa Download sequence Send to blast |
MDVTGDAGGG RRPNFPLQLL EKKEEQPCST SPAAAAGAGA NGSAGSGEMM XMKKVAPXKR 60 TSTKDRHTXV DXRGRRIRMP AICAARVVQL TRELGHKDGR GDNRMGCCNR RDPRVIEGNG 120 PRDHSGPLLP G |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.7459 | 0.0 | inflorescence| leaf |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436745.1 | 1e-53 | transcription factor TCP14 | ||||
TrEMBL | C5Z727 | 2e-52 | C5Z727_SORBI; Uncharacterized protein | ||||
STRING | Sb10g008030.1 | 4e-53 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69690.1 | 4e-22 | TCP family protein |