PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019714
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 132aa    MW: 14539.6 Da    PI: 10.4166
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-17393PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.32e-341670155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Sof019714 16 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRL 70
               58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6131373IPR017930Myb domain
SuperFamilySSF466898.24E-191571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-331571IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-261771IPR006447Myb domain, plants
PfamPF002499.0E-101869IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MGPTNGANNN TNMAARQRLR WTNELHERFV EAVTQLGGPD RATPKGVLRI MGVQGLTIYH  60
VKSHLQKYRL AKYIPDASTD GNKADNKDPG DLLAGLEGIL WIAISEALKL QWEVQKRLHK  120
QLGSTKAAAV AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-271673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-271673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-271673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-271673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460002.14e-80myb family transcription factor PHL7
SwissprotQ9SJW04e-59PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLC5X8Z31e-78C5X8Z3_SORBI; Uncharacterized protein
STRINGSb02g020700.12e-79(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-59G2-like family protein