PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | WRKY | ||||||||
Protein Properties | Length: 142aa MW: 15128.5 Da PI: 9.7689 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64 | 2.5e-20 | 99 | 140 | 2 | 42 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa 42 +D ++WrKYGqK++kgs++pr+YYr +s gCp++k+vers+ Sof019257 99 SDSWAWRKYGQKPIKGSPYPRGYYRWSSFqGCPARKQVERSR 140 69***********************87665**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-21 | 94 | 140 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-16 | 96 | 140 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-14 | 98 | 142 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.895 | 99 | 142 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-17 | 100 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MSSAEDGYCS SDSPRAESPD EPLLPAAGAG AGADADAESP RAGAAGLNKR ERDLPASPTS 60 PLPPAKRSRR SVEKRVVSVP LAECGDRPRG ATGEGPPPSD SWAWRKYGQK PIKGSPYPRG 120 YYRWSSFQGC PARKQVERSR AX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458491.1 | 1e-68 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 1e-31 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | C5XK43 | 2e-67 | C5XK43_SORBI; Uncharacterized protein | ||||
STRING | Sb03g034670.1 | 4e-68 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 2e-24 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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