PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 145aa MW: 15155.9 Da PI: 10.4539 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 87 | 130 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 ++WT+ + lv+a k ++++ +W+++a+ ++ g+t qck + Sof019146 87 DAWTEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 130 58********************************.********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.1E-5 | 85 | 137 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.64E-9 | 87 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-7 | 88 | 130 | No hit | No description |
Pfam | PF00249 | 6.4E-7 | 88 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-5 | 88 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.179 | 89 | 130 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
XILKATKSVL LQKPDSSKAF DSFLEKRKPA QSIASPLSTR DEISSSTEGA GTASSKATAQ 60 PASSQAANGK AAADPVPDGA PSVADPDAWT EAQVLALVQA LKAFPKDASQ RWERVAAAVP 120 GKTVVQCKKK VAAMRENFRS KKTGE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.6503 | 1e-108 | bud| callus| inflorescence| leaf| root| seed |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304978.1 | 9e-88 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | A0A1E5VXU1 | 2e-87 | A0A1E5VXU1_9POAL; Uncharacterized protein | ||||
TrEMBL | C5WSF7 | 2e-86 | C5WSF7_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ga01997.1.p | 4e-84 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 5e-36 | DnaJ domain ;Myb-like DNA-binding domain |