PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019058
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HD-ZIP
Protein Properties Length: 147aa    MW: 16437.1 Da    PI: 9.5602
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17355739PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-183689356
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               k++++++e +++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Sof019058 36 KKRRLSAEXVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 89
               456899***********************************************9 PP
2HD-ZIP_I/II127.84.7e-4135122188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  ekkrrls+e v++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+ y+aL+++ydal++e+++L +++++L 
    Sof019058  35 EKKRRLSAEXVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERGYAALRHSYDALSHEHDALPRDKDALL 122
                  69*********************************************************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-192693IPR009057Homeodomain-like
PROSITE profilePS5007116.9253191IPR001356Homeobox domain
SMARTSM003893.8E-173495IPR001356Homeobox domain
PfamPF000466.4E-163689IPR001356Homeobox domain
CDDcd000866.77E-153692No hitNo description
Gene3DG3DSA:1.10.10.601.0E-193797IPR009057Homeodomain-like
PRINTSPR000313.7E-66271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000313.7E-67187IPR000047Helix-turn-helix motif
PfamPF021832.4E-1091122IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MTNPDDDGYG VVGMEADADA DEEMMACGGG GGGGEKKRRL SAEXVRALER SFEVENKLEP  60
ERKARLARDL GLQPRQVAVW FQNRRARWKT KQLERGYAAL RHSYDALSHE HDALPRDKDA  120
LLPRSRAQGK LGNKRHGNLT GQAEPRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066ERKARLA
28391RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.28530.0bud| inflorescence| leaf| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf and floral organ primordia, floral meristems, embryonic axis and cells surrounding the vascular bundles. Expressed in the vasculature of roots, stem, leaves and spikelets, and in the vascular bundle of the scutellum in embryos. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniprotTISSUE SPECIFICITY: Expressed in leaf and floral organ primordia, floral meristems, embryonic axis and cells surrounding the vascular bundles. Expressed in the vasculature of roots, stem, leaves and spikelets, and in the vascular bundle of the scutellum in embryos. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957072.15e-66homeobox-leucine zipper protein HOX4
SwissprotQ6K4985e-65HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH375e-65HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLK3ZW401e-64K3ZW40_SETIT; Uncharacterized protein
STRINGSi030822m2e-65(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-40homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]