PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof018988 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 148aa MW: 16451 Da PI: 10.4559 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.2 | 5.1e-43 | 11 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 lppGfrF+Ptdeel+v+yL++++ +++l+ + i++v+i+ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v ++ Sof018988 11 LPPGFRFRPTDEELIVHYLRRRALASPLPPAVDIPDVRILAHDPSDLlP--PGFSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVAVAipaa 108 79*************************988556**************53..3447899************************************999999 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + lvg+k +Lvf +++ p+g+ktdWvmheyrl Sof018988 109 arggqgQAVLVGMKPSLVFNREKPPTGSKTDWVMHEYRL 147 8876544455***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-44 | 8 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.678 | 11 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-25 | 12 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 148 aa Download sequence Send to blast |
MEVKDAAKPR LPPGFRFRPT DEELIVHYLR RRALASPLPP AVDIPDVRIL AHDPSDLLPP 60 GFSEQERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAIPAAAR GGQGQAVLVG 120 MKPSLVFNRE KPPTGSKTDW VMHEYRLG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-33 | 7 | 147 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.1434 | 1e-154 | bud| crown| inflorescence| leaf| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443168.1 | 1e-96 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-47 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | C5YNL7 | 3e-95 | C5YNL7_SORBI; Uncharacterized protein | ||||
STRING | Sb08g014060.1 | 6e-96 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-50 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
---|---|---|---|
|